Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G67350 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 0.0e+00 2086.2 1046 100.0
AL1G67370 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 8.3e-210 734.9 857 51.1
AL3G41440 Arabidopsis lyrata HOM05D013448 ORTHO05D021414 2.5e-137 494.2 258 93.8
AL7G51780 Arabidopsis lyrata HOM05D013448 ORTHO05D001112 2.8e-125 454.1 358 68.2
AL5G18360 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.9e-109 400.2 208 94.2
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 4.5e-54 217.6 287 46.7
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 4.9e-53 214.2 312 40.7
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 4.9e-53 214.2 286 45.5
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 1.4e-52 212.6 312 41.0
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 1.4e-52 212.6 312 41.0
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 2.1e-51 208.8 308 40.3
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 2.1e-51 208.8 308 40.3
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 1.0e-50 206.5 287 44.6
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 5.1e-50 204.1 287 44.9
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.5e-49 202.6 295 43.1
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 2.5e-49 201.8 313 41.2
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 2.5e-49 201.8 295 42.0
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 3.3e-49 201.4 312 40.7
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 4.3e-49 201.1 317 39.7
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 9.6e-49 199.9 314 39.2
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.6e-48 199.1 308 40.9
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.8e-48 198.4 313 40.9
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 1.4e-47 196.1 302 40.1
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 1.8e-47 195.7 307 41.0
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 1.8e-47 195.7 307 41.0
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 1.8e-47 195.7 307 41.0
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 2.4e-47 195.3 371 37.2
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 2.0e-46 192.2 290 42.1
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 4.5e-46 191.0 289 39.1
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 5.8e-46 190.7 289 39.1
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 1.7e-45 189.1 332 38.6
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 2.2e-45 188.7 307 40.4
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 2.2e-45 188.7 289 38.8
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 6.5e-45 187.2 307 40.1
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 1.1e-44 186.4 289 37.0
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.8e-42 179.1 287 37.3
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 2.3e-42 178.7 289 36.7
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 3.0e-42 178.3 287 37.6
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 6.7e-42 177.2 291 35.7
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 6.7e-42 177.2 292 36.3
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 8.7e-42 176.8 285 38.2
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 1.9e-41 175.6 282 37.2
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 3.3e-41 174.9 368 30.7
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 4.3e-41 174.5 287 35.9
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 7.4e-41 173.7 287 37.3
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 9.7e-41 173.3 287 36.9
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 9.7e-41 173.3 287 36.9
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 9.7e-41 173.3 287 36.6
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 1.3e-40 172.9 289 36.7
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.6e-40 172.6 287 36.9
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.2e-40 172.2 287 36.9
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 3.7e-40 171.4 294 36.7
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 4.8e-40 171.0 312 34.0
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 4.8e-40 171.0 294 35.4
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 4.8e-40 171.0 287 37.3
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 8.2e-40 170.2 383 30.3
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 1.1e-39 169.9 291 35.7
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.1e-39 169.9 287 36.6
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 1.1e-39 169.9 297 34.3
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 1.4e-39 169.5 288 34.7
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 3.1e-39 168.3 295 35.3
CAN.G337.89 Capsicum annuum HOM05D003177 ORTHO05D003481 9.0e-39 166.8 316 32.6
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 9.0e-39 166.8 316 33.5
Potri.011G133100 Populus trichocarpa HOM05D003177 ORTHO05D003481 9.0e-39 166.8 283 36.0
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.2e-38 166.4 294 34.7
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 1.2e-38 166.4 281 36.3
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 1.5e-38 166.0 291 33.7
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.5e-38 166.0 294 34.7
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 1.5e-38 166.0 257 37.7
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 2.0e-38 165.6 282 35.5
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 2.6e-38 165.2 303 33.0
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 3.4e-38 164.9 258 39.9
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 4.5e-38 164.5 294 34.0
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 4.5e-38 164.5 291 33.7
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 1.0e-37 163.3 306 33.7
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 1.0e-37 163.3 304 34.5
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 1.3e-37 162.9 290 35.9
arahy.Tifrunner.gnm1.ann1.LTHE3G Arachis hypogaea HOM05D003177 ORTHO05D003481 1.7e-37 162.5 294 33.3
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 3.8e-37 161.4 342 29.5
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 3.8e-37 161.4 293 33.8
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 6.5e-37 160.6 278 36.0
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 8.5e-37 160.2 289 34.9
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.1e-36 159.8 294 33.7
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 1.1e-36 159.8 333 33.3
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 1.9e-36 159.1 313 32.6
Sabra16G0283700 Salix brachista HOM05D003177 ORTHO05D003481 3.2e-36 158.3 343 34.7
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 4.2e-36 157.9 352 30.7
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 7.2e-36 157.1 300 32.0
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 9.3e-36 156.8 319 33.9
FAN21G1934 Fragaria x ananassa HOM05D003177 ORTHO05D003481 9.3e-36 156.8 288 33.0
arahy.Tifrunner.gnm1.ann1.2UU78P Arachis hypogaea HOM05D003177 ORTHO05D003481 1.6e-35 156.0 240 40.0
arahy.Tifrunner.gnm1.ann1.JSI4TH Arachis hypogaea HOM05D003177 ORTHO05D003481 1.6e-35 156.0 240 40.0
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 2.7e-35 155.2 287 35.5
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 2.7e-35 155.2 306 33.7
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 3.6e-35 154.8 285 35.8
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 4.6e-35 154.5 302 31.8
FvH4_3g43110 Fragaria vesca HOM05D003177 ORTHO05D003481 7.9e-35 153.7 287 32.1
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 1.0e-34 153.3 314 31.8
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 1.3e-34 152.9 285 34.0
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 1.3e-34 152.9 340 30.6
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 1.8e-34 152.5 285 34.4
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 1.8e-34 152.5 321 35.2
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 5.1e-34 151.0 297 32.3
FvH4_3g43180 Fragaria vesca HOM05D003177 ORTHO05D003481 6.7e-34 150.6 288 32.3
VMungo1127G0088 Vigna mungo HOM05D003177 ORTHO05D003481 6.7e-34 150.6 302 31.5
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 8.8e-34 150.2 374 29.4
VMungo1080G1398 Vigna mungo HOM05D003177 ORTHO05D003481 1.1e-33 149.8 260 36.5
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.5e-33 149.4 293 32.4
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 1.5e-33 149.4 293 33.4
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 4.3e-33 147.9 365 31.2
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 4.3e-33 147.9 303 29.7
AL1G18540 Arabidopsis lyrata HOM05D013448 ORTHO05D021414 5.7e-33 147.5 318 34.0
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 5.7e-33 147.5 291 32.0
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 1.3e-32 146.4 258 35.3
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.7e-32 146.0 337 31.8
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 2.2e-32 145.6 260 36.2
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 6.9e-31 140.6 304 31.9
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 9.1e-31 140.2 244 37.3
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 2.6e-30 138.7 233 34.8
AL2G12710 Arabidopsis lyrata HOM05D013448 ORTHO05D016590 7.7e-30 137.1 81 85.2
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 7.7e-30 137.1 292 30.5
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 1.3e-29 136.3 288 30.2
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 5.0e-29 134.4 329 28.9
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 5.0e-29 134.4 271 35.8
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 8.5e-29 133.7 303 29.4
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 1.1e-28 133.3 313 30.0
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 4.2e-28 131.3 232 34.9
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 4.7e-27 127.9 400 29.0
Ciclev10008319m.g Citrus clementina HOM05D003177 ORTHO05D003481 6.1e-27 127.5 183 42.6
Ciclev10008519m.g Citrus clementina HOM05D003177 ORTHO05D003481 7.9e-27 127.1 183 43.2
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 1.1e-25 123.2 316 31.6
C01p36490 Brassica napus HOM05D025437 ORTHO05D016590 1.5e-25 122.9 133 53.4
Duzib213G0184 Durio zibethinus HOM05D003177 ORTHO05D003481 1.3e-24 119.8 356 28.9
FvH4_3g42560 Fragaria vesca HOM05D003177 ORTHO05D003481 1.3e-24 119.8 313 29.4
QL08p013313 Quercus lobata HOM05D003177 ORTHO05D003481 4.8e-24 117.9 205 39.0
Glyma.U031131 Glycine max HOM05D003177 ORTHO05D003481 1.8e-23 115.9 203 35.0
FvH4_3g42340 Fragaria vesca HOM05D003177 ORTHO05D003481 6.9e-23 114.0 313 29.1
PSO478G2228 Papaver somniferum HOM05D003177 ORTHO05D003481 1.5e-22 112.8 228 33.8
SHI50408 Sapria himalayana HOM05D003177 ORTHO05D003481 2.6e-22 112.1 260 33.8
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 3.8e-21 108.2 291 29.2
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 1.4e-20 106.3 142 41.5
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 1.4e-20 106.3 249 32.5
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 1.9e-20 105.9 137 44.5
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 4.2e-20 104.8 254 32.3
Os02g0132600 Oryza sativa ssp. japonica HOM05D003177 ORTHO05D003481 5.5e-20 104.4 263 30.0
CsaV3_UNG228980 Cucumis sativus L. HOM05D003177 ORTHO05D003481 9.4e-20 103.6 180 35.6
BcaC09g51195 Brassica carinata HOM05D003177 ORTHO05D003481 2.1e-19 102.4 209 37.3
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 2.7e-19 102.1 253 31.6
C05p13000 Brassica napus HOM05D009700 ORTHO05D012032 1.4e-18 99.8 180 33.9
Sp2g06910 Schrenkiella parvula HOM05D013448 ORTHO05D021414 2.3e-18 99.0 237 34.6
SpUn0014_0060 Schrenkiella parvula HOM05D013448 ORTHO05D021414 2.3e-18 99.0 237 34.6
FAN11G2904 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.0e-18 98.6 357 27.2
Thhalv10023071m.g Eutrema salsugineum HOM05D013448 ORTHO05D016590 6.7e-18 97.4 127 48.8
Phvul.005G091800 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 6.7e-18 97.4 194 32.0
Medtr4g081210 Medicago truncatula HOM05D003177 ORTHO05D003481 1.5e-17 96.3 175 34.9
FAN11G0113 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.6e-17 95.5 347 26.5
FAN28G1104 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.3e-17 95.1 353 27.2
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 6.3e-16 90.9 222 29.3
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 5.3e-15 87.8 200 34.5
Cpa.g.sc97.66 Carica papaya HOM05D003177 ORTHO05D003481 1.2e-14 86.7 102 46.1
A08p28740 Brassica napus HOM05D009700 ORTHO05D001112 2.0e-14 85.9 274 24.8
AT3G14780 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 2.9e-13 82.0 159 35.8
BcaC09g51242 Brassica carinata HOM05D011339 ORTHO05D012985 1.1e-12 80.1 169 29.6
BcaC03g17080 Brassica carinata HOM05D009700 ORTHO05D012032 2.5e-12 79.0 238 27.7
BraA09t38648Z Brassica rapa HOM05D011339 ORTHO05D012985 5.5e-12 77.8 170 30.0
AL3G27090 Arabidopsis lyrata HOM05D000230 ORTHO05D016590 7.2e-12 77.4 88 45.5
CDE12G0466 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 7.2e-12 77.4 104 38.5
Glyma.13G287400 Glycine max HOM05D003177 ORTHO05D003481 2.1e-11 75.9 175 28.0
Aa31sc70G40 Aethionema arabicum HOM05D009700 ORTHO05D012032 2.7e-11 75.5 251 23.5
Sc19g0005960 Simmondsia chinensis HOM05D003177 ORTHO05D003481 4.7e-11 74.7 157 31.2
FAN21G2694 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.4e-10 73.2 102 40.2
BolC6t37458H Brassica oleracea HOM05D009700 ORTHO05D001112 3.0e-10 72.0 92 41.3
A02p24700 Brassica napus HOM05D030042 ORTHO05D027534 1.2e-09 70.1 150 32.0
FAN11G0078 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.8e-08 65.5 185 29.2
BcaB04g18577 Brassica carinata HOM05D009700 ORTHO05D012032 6.3e-08 64.3 130 30.8
SpUn0248_0010 Schrenkiella parvula HOM05D013448 ORTHO05D021414 8.2e-08 63.9 100 40.0
BcaB04g18158 Brassica carinata HOM05D011339 ORTHO05D012985 1.1e-07 63.5 226 28.8
unitig_26.g9968 Utricularia gibba HOM05D003177 ORTHO05D003481 3.1e-07 62.0 138 29.7
Aa31LG9G11090 Aethionema arabicum HOM05D011111 ORTHO05D001112 4.1e-07 61.6 80 32.5
Aa31LG9G11080 Aethionema arabicum HOM05D011111 ORTHO05D001112 1.2e-06 60.1 78 33.3
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 1.2e-06 60.1 103 33.0
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 1.6e-06 59.7 119 31.1
BcaC02g11176 Brassica carinata HOM05D011111 ORTHO05D001112 2.0e-06 59.3 73 32.9
CsaV3_UNG228990 Cucumis sativus L. HOM05D003177 ORTHO05D003481 2.7e-06 58.9 106 29.2
C07p08480 Brassica napus HOM05D009700 ORTHO05D012032 4.5e-06 58.2 83 38.6
Hma1.2p1_1546F.1_g289980 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 5.9e-06 57.8 104 34.6
Carub.0005s1400 Capsella rubella HOM05D004889 ORTHO05D016590 7.7e-06 57.4 79 44.3


User provided reference genes

Program Settings