Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.2e-223 779.6 423 100.0
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 7.4e-157 557.8 422 77.0
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.3e-124 450.7 437 59.5
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.1e-120 437.6 467 56.5
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 5.4e-91 339.0 447 47.2
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 6.6e-81 305.4 431 46.6
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 2.1e-79 300.4 429 46.9
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 2.1e-79 300.4 429 46.9
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 3.4e-77 293.1 431 45.9
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 4.4e-77 292.7 429 45.9
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 1.9e-72 277.3 426 44.8
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 4.3e-72 276.2 432 42.6
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 4.4e-53 213.0 430 35.8
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 1.3e-49 201.4 437 36.6
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 5.1e-49 199.5 436 34.4
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 2.5e-48 197.2 456 35.3
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 9.6e-48 195.3 429 35.9
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 2.0e-45 187.6 448 33.7
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 1.8e-41 174.5 426 31.9
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 8.7e-41 172.2 426 31.9
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 1.9e-40 171.0 470 32.6
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 2.5e-40 170.6 426 31.9
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 2.8e-39 167.2 426 31.7
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.9e-35 154.5 318 35.2
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 3.2e-27 127.1 516 26.6
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 1.4e-22 111.7 541 24.8
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.5e-21 108.2 519 23.5
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.5e-21 108.2 519 23.5
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 3.4e-21 107.1 493 24.5
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 1.7e-20 104.8 182 33.0
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 2.9e-20 104.0 581 24.1
BolC3t13228H Brassica oleracea HOM05D009880 ORTHO05D004072 4.2e-19 100.1 356 28.9
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 1.0e-17 95.5 172 33.1
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 1.8e-17 94.7 423 24.6
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 2.3e-17 94.4 155 34.8
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 3.0e-17 94.0 176 30.7
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 1.5e-16 91.7 141 34.8
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 4.3e-16 90.1 89 44.9
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 4.3e-16 90.1 201 30.8
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 7.4e-16 89.4 511 23.7
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 9.7e-16 89.0 82 47.6
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 2.2e-15 87.8 193 29.5
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.8e-15 87.4 230 28.7
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 4.8e-15 86.7 138 34.1
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 1.4e-14 85.1 151 33.8
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 1.4e-14 85.1 151 33.8
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 5.3e-14 83.2 138 31.2
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 1.5e-13 81.6 153 32.7
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 4.5e-13 80.1 89 40.4
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 4.5e-13 80.1 99 42.4
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 7.7e-13 79.3 87 42.5
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 1.3e-12 78.6 84 42.9
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 1.3e-12 78.6 171 29.2
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 1.7e-12 78.2 75 45.3
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 2.2e-12 77.8 154 27.9
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 2.2e-12 77.8 81 43.2
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.8e-12 77.0 158 31.6
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 5.0e-12 76.6 84 41.7
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 5.0e-12 76.6 193 28.0
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 6.5e-12 76.3 95 36.8
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 6.5e-12 76.3 84 41.7
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 8.5e-12 75.9 604 22.2
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 1.1e-11 75.5 86 43.0
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 1.4e-11 75.1 85 41.2
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 1.9e-11 74.7 248 26.2
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 1.9e-11 74.7 149 33.6
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 1.9e-11 74.7 147 32.7
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 4.2e-11 73.6 83 41.0
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 4.2e-11 73.6 148 30.4
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 5.5e-11 73.2 133 29.3
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 7.2e-11 72.8 190 28.4
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 9.4e-11 72.4 80 42.5
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 9.4e-11 72.4 82 42.7
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.2e-10 72.0 85 37.6
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 1.2e-10 72.0 149 30.2
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 2.1e-10 71.2 95 34.7
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 2.1e-10 71.2 79 41.8
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 2.7e-10 70.9 77 41.6
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 2.7e-10 70.9 166 27.7
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 4.7e-10 70.1 96 37.5
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 6.1e-10 69.7 84 39.3
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 6.1e-10 69.7 85 38.8
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 1.4e-09 68.6 120 32.5
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 2.3e-09 67.8 203 24.1
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 3.0e-09 67.4 107 33.6
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 5.1e-09 66.6 51 56.9
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 5.1e-09 66.6 118 33.9
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 5.1e-09 66.6 118 33.9
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 5.1e-09 66.6 109 33.9
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 6.7e-09 66.2 89 40.4
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 1.5e-08 65.1 92 37.0
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 2.0e-08 64.7 150 28.0
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 2.0e-08 64.7 58 51.7
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 2.0e-08 64.7 52 53.8
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 2.6e-08 64.3 111 34.2
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 2.6e-08 64.3 111 34.2
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 2.6e-08 64.3 100 32.0
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 4.4e-08 63.5 85 35.3
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 4.4e-08 63.5 75 41.3
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 4.4e-08 63.5 50 54.0
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 7.4e-08 62.8 105 38.1
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 9.7e-08 62.4 112 33.9
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 9.7e-08 62.4 48 54.2
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 9.7e-08 62.4 48 54.2
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 9.7e-08 62.4 50 54.0
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 1.3e-07 62.0 92 34.8
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.3e-07 62.0 137 31.4
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 1.7e-07 61.6 58 48.3
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.8e-07 60.8 61 45.9
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.8e-07 60.8 61 45.9
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 2.8e-07 60.8 48 52.1
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 2.8e-07 60.8 55 50.9
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 2.8e-07 60.8 102 35.3
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 3.7e-07 60.5 179 30.2
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 3.7e-07 60.5 167 26.3
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 8.2e-07 59.3 48 52.1
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 1.4e-06 58.5 41 58.5
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.4e-06 58.5 106 32.1
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.8e-06 58.2 137 28.5
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 1.8e-06 58.2 45 51.1
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 2.4e-06 57.8 369 22.5
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 3.1e-06 57.4 138 29.0
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 3.1e-06 57.4 45 55.6
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 3.1e-06 57.4 49 46.9
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 3.1e-06 57.4 126 32.5


User provided reference genes

Program Settings