Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 1.0e-108 396.7 196 100.0
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 2.6e-104 382.1 196 95.9
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 4.1e-94 348.2 197 88.3
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 2.1e-90 335.9 202 88.6
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 2.3e-81 305.8 200 81.5
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 2.9e-79 298.9 202 78.7
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 2.6e-72 275.8 196 76.0
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 8.3e-71 270.8 196 74.5
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 3.2e-70 268.9 199 73.9
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 5.4e-70 268.1 198 73.7
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 1.6e-69 266.5 198 73.2
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 1.6e-69 266.5 198 73.2
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 3.5e-69 265.4 199 73.4
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 8.6e-60 234.2 203 65.0
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 9.9e-56 220.7 149 73.2
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 9.9e-56 220.7 149 73.2
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 1.1e-54 217.2 198 62.6
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 1.9e-54 216.5 125 80.8
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 1.9e-54 216.5 149 71.8
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.9e-54 216.5 184 65.8
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 5.4e-54 214.9 141 71.6
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 1.6e-53 213.4 117 83.8
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 2.1e-53 213.0 117 83.8
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 2.1e-53 213.0 186 62.9
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 2.1e-53 213.0 186 62.9
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 2.1e-53 213.0 140 72.9
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.1e-53 213.0 140 72.9
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 2.7e-53 212.6 141 74.5
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 3.5e-53 212.2 117 83.8
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 4.6e-53 211.8 187 64.2
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 4.6e-53 211.8 138 76.1
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 7.8e-53 211.1 194 61.9
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 7.8e-53 211.1 113 86.7
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.7e-52 209.9 193 59.6
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 1.7e-52 209.9 196 59.2
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.3e-52 209.5 119 82.4
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 2.3e-52 209.5 206 59.7
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 3.0e-52 209.1 119 80.7
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 3.0e-52 209.1 124 79.0
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 3.0e-52 209.1 155 67.7
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 3.0e-52 209.1 194 59.3
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.9e-52 208.8 193 59.6
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 6.6e-52 208.0 194 61.3
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 6.6e-52 208.0 158 67.1
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 1.9e-51 206.5 141 72.3
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 1.9e-51 206.5 171 62.0
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 1.9e-51 206.5 197 60.4
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 2.5e-51 206.1 200 59.0
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 3.3e-51 205.7 149 67.8
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 9.6e-51 204.1 204 58.3
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 9.6e-51 204.1 194 60.3
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 1.2e-50 203.8 154 66.2
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.2e-50 203.8 164 64.0
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 1.2e-50 203.8 129 73.6
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.6e-50 203.4 150 66.7
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 1.6e-50 203.4 138 72.5
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 2.8e-50 202.6 195 57.9
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 2.8e-50 202.6 195 60.0
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 3.6e-50 202.2 150 66.0
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 4.7e-50 201.8 208 59.1
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 6.2e-50 201.4 111 85.6
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 6.2e-50 201.4 192 59.4
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 6.2e-50 201.4 214 57.5
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 8.1e-50 201.1 117 77.8
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 1.1e-49 200.7 139 69.1
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 1.1e-49 200.7 113 82.3
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.4e-49 200.3 208 58.7
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 1.8e-49 199.9 165 61.2
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 2.4e-49 199.5 161 63.4
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 2.4e-49 199.5 122 77.0
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 2.4e-49 199.5 209 56.5
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 4.0e-49 198.7 120 77.5
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 4.0e-49 198.7 138 70.3
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 5.3e-49 198.4 138 71.0
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 9.0e-49 197.6 186 59.1
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 9.0e-49 197.6 115 79.1
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 1.2e-48 197.2 198 57.1
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 1.5e-48 196.8 198 58.1
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.5e-48 196.8 116 78.4
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 1.5e-48 196.8 113 81.4
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 1.5e-48 196.8 113 81.4
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 1.5e-48 196.8 113 81.4
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 2.0e-48 196.4 114 79.8
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 3.4e-48 195.7 145 64.8
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 4.4e-48 195.3 172 60.5
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 5.8e-48 194.9 114 76.3
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 9.9e-48 194.1 172 59.9
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 2.2e-47 193.0 198 54.5
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 1.4e-46 190.3 210 57.6
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.4e-46 189.5 147 62.6
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 5.4e-46 188.3 204 54.4
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 5.4e-46 188.3 190 56.8
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 9.3e-46 187.6 114 73.7
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 1.2e-45 187.2 114 73.7
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 1.2e-45 187.2 172 57.0
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 6.0e-45 184.9 166 56.6
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 7.8e-45 184.5 179 58.7
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 1.0e-44 184.1 191 56.0
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 2.3e-44 183.0 175 56.0
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 1.5e-43 180.3 137 62.8
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 1.9e-43 179.9 151 60.9
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 2.5e-43 179.5 207 52.7
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.6e-42 176.8 128 64.1
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.6e-42 176.8 128 64.8
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 1.6e-42 176.8 169 53.3
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 6.2e-42 174.9 133 62.4
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.8e-41 173.3 96 80.2
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 1.8e-41 173.3 89 86.5
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 4.0e-41 172.2 98 79.6
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 5.3e-41 171.8 203 48.3
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 4.5e-40 168.7 109 71.6
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 5.8e-40 168.3 178 56.2
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 3.8e-39 165.6 139 59.0
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 8.4e-39 164.5 169 51.5
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 1.9e-38 163.3 113 67.3
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 5.4e-38 161.8 135 57.8
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 5.4e-38 161.8 108 68.5
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 2.7e-37 159.5 137 59.1
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 1.5e-35 153.7 146 52.1
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.9e-35 153.3 78 84.6
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 4.3e-35 152.1 126 61.9
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 1.4e-30 137.1 124 51.6
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 1.1e-27 127.5 113 52.2
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.4e-25 120.6 65 76.9
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 4.0e-25 119.0 135 45.2
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 1.0e-23 114.4 117 48.7
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.2e-13 80.9 84 48.8


User provided reference genes

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