Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 7.2e-85 317.4 183 100.0
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 9.8e-82 307.0 184 98.4
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 9.8e-82 307.0 184 97.8
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.9e-81 304.7 183 90.2
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 2.4e-80 302.4 183 84.7
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 5.4e-80 301.2 183 85.2
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 5.4e-80 301.2 183 85.2
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 2.7e-79 298.9 183 84.2
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 4.5e-79 298.1 183 84.2
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 4.5e-79 298.1 183 84.2
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.3e-78 295.8 183 94.5
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.5e-77 293.1 183 82.5
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.5e-77 293.1 181 95.0
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.4e-72 276.6 180 87.8
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 3.2e-72 275.4 183 84.2
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 1.7e-70 269.6 183 83.1
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 9.5e-69 263.8 183 85.8
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 9.5e-69 263.8 180 75.0
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 9.5e-69 263.8 180 75.0
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 2.1e-68 262.7 178 77.5
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 4.7e-68 261.5 180 73.3
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 8.0e-68 260.8 180 72.8
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 8.0e-68 260.8 181 75.1
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 1.5e-66 256.5 181 73.5
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 7.5e-66 254.2 181 71.8
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.7e-65 253.1 184 71.7
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 1.7e-65 253.1 183 79.2
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 2.9e-65 252.3 180 72.2
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 3.7e-65 251.9 142 88.0
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 3.7e-65 251.9 180 71.7
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 6.4e-65 251.1 180 70.0
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 6.4e-65 251.1 180 70.6
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 8.3e-65 250.8 185 72.4
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 8.3e-65 250.8 180 72.2
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 8.3e-65 250.8 184 71.2
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 8.3e-65 250.8 184 71.2
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.1e-64 250.4 180 71.1
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.4e-64 250.0 180 71.1
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.4e-64 250.0 182 72.0
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.4e-64 250.0 180 71.7
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 2.4e-64 249.2 183 71.0
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.4e-64 249.2 180 71.7
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.4e-64 249.2 180 71.7
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 3.2e-64 248.8 180 71.7
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.2e-64 248.8 180 71.7
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 3.2e-64 248.8 183 79.2
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 3.2e-64 248.8 179 70.9
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.2e-64 248.8 180 68.9
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 3.2e-64 248.8 180 69.4
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 5.4e-64 248.1 178 71.9
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 5.4e-64 248.1 184 69.0
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 7.0e-64 247.7 184 69.0
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 7.0e-64 247.7 184 70.7
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.2e-63 246.9 180 71.7
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.7e-63 245.7 180 69.4
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.7e-63 245.7 181 70.7
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 3.5e-63 245.4 174 71.8
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.6e-63 245.0 181 70.2
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 4.6e-63 245.0 180 70.6
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.6e-63 245.0 180 68.3
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 4.6e-63 245.0 181 70.2
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 4.6e-63 245.0 181 70.2
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 4.6e-63 245.0 184 69.6
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 4.6e-63 245.0 179 70.4
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 6.0e-63 244.6 180 69.4
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 6.0e-63 244.6 169 73.4
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 7.8e-63 244.2 180 70.6
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 7.8e-63 244.2 180 69.4
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.0e-62 243.8 193 75.6
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.0e-62 243.8 180 71.7
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.3e-62 243.4 183 68.9
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 1.7e-62 243.0 183 68.3
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 2.3e-62 242.7 180 68.3
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.0e-62 242.3 180 68.3
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.0e-62 241.5 181 69.1
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.1e-61 240.4 182 68.1
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.5e-61 240.0 181 70.2
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.5e-61 240.0 181 70.2
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 3.3e-61 238.8 183 70.5
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 3.3e-61 238.8 183 70.5
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 3.3e-61 238.8 179 69.8
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 4.3e-61 238.4 183 70.5
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 4.3e-61 238.4 170 74.1
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 4.3e-61 238.4 177 70.1
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.6e-60 236.5 182 75.3
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 2.8e-60 235.7 181 67.4
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 2.8e-60 235.7 179 69.3
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 4.7e-60 235.0 175 70.3
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 6.2e-60 234.6 180 69.4
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 8.1e-60 234.2 183 68.3
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 8.1e-60 234.2 181 68.0
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 8.1e-60 234.2 177 68.4
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.1e-59 233.8 177 70.1
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.8e-59 233.0 178 66.3
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 3.1e-59 232.3 185 68.1
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 3.1e-59 232.3 185 68.1
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 4.0e-59 231.9 175 69.1
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 4.0e-59 231.9 172 76.2
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 4.0e-59 231.9 180 66.7
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 5.2e-59 231.5 178 79.8
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 6.8e-59 231.1 143 81.1
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.0e-58 229.6 174 69.5
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 3.4e-58 228.8 180 66.1
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 5.8e-58 228.0 184 65.8
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 5.8e-58 228.0 184 65.8
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 9.9e-58 227.3 180 66.1
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 9.9e-58 227.3 182 64.8
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 9.9e-58 227.3 179 65.4
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.3e-57 226.9 180 66.1
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.2e-57 226.1 177 67.2
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 2.9e-57 225.7 178 65.7
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 2.9e-57 225.7 174 67.2
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 3.7e-57 225.3 184 66.8
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.1e-56 223.8 177 64.4
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.9e-56 223.0 184 66.3
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 2.4e-56 222.6 172 78.5
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 9.2e-56 220.7 179 65.4
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 1.2e-55 220.3 179 65.4
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 2.3e-54 216.1 143 74.1
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 6.6e-54 214.5 185 63.2
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.1e-53 213.8 185 62.7
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 3.3e-53 212.2 183 70.5
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 4.3e-53 211.8 128 82.8
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 9.5e-53 210.7 174 63.2
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 1.1e-51 207.2 162 74.7
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.4e-51 206.8 136 72.8
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.4e-51 206.1 181 60.2
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.7e-49 199.9 142 68.3
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 4.9e-49 198.4 119 79.8
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 6.4e-49 198.0 252 48.0
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.4e-48 196.8 193 58.0
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 3.0e-46 189.1 136 65.4
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 7.3e-45 184.5 126 69.8
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 7.3e-45 184.5 127 70.1
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 7.3e-45 184.5 138 70.3
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 1.2e-44 183.7 134 64.9
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.6e-44 183.3 145 66.9
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 4.7e-44 181.8 134 69.4
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 2.4e-40 169.5 133 61.7
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 9.6e-37 157.5 95 77.9
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 8.1e-36 154.5 101 80.2
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.2e-34 150.6 117 70.9
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.5e-34 148.7 84 83.3
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.5e-34 148.7 98 73.5
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 9.3e-32 141.0 87 81.6
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.2e-31 140.6 174 46.6
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 4.6e-31 138.7 113 65.5
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.3e-30 137.1 140 52.1
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 2.4e-27 126.3 135 52.6
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 5.3e-27 125.2 79 84.8
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 5.3e-27 125.2 79 84.8
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 4.9e-25 118.6 127 52.8
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.1e-24 117.5 114 57.0
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 3.9e-22 109.0 118 44.9
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 4.0e-19 99.0 103 44.7
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.1e-16 90.9 138 37.7
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 3.5e-15 85.9 95 51.6
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.1e-14 82.0 44 84.1
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.1e-13 80.9 64 70.3
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.9e-13 80.1 89 48.3
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 2.8e-12 76.3 68 58.8
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 4.8e-12 75.5 80 52.5
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.4e-11 73.9 106 35.8
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 4.2e-08 62.4 85 44.7
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.2e-07 60.8 138 32.6
A06p00520 Brassica napus HOM05D004222 ORTHO05D004982 6.1e-07 58.5 34 82.4


User provided reference genes

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