Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 0.0e+00 1097.8 618 100.0
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.2e-254 881.7 616 84.1
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 4.3e-238 828.2 637 77.6
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.5e-224 781.9 633 75.5
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 7.1e-217 757.7 690 69.4
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 2.6e-211 739.2 636 69.2
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 5.8e-211 738.0 646 71.8
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 8.4e-210 734.2 634 69.2
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 7.1e-209 731.1 638 68.8
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 9.6e-206 720.7 599 72.5
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 1.5e-195 686.8 603 69.0
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 1.5e-195 686.8 603 69.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 8.2e-165 584.7 653 56.2
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.4e-127 461.1 463 58.7
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.8e-127 460.7 451 59.6
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.6e-123 447.6 463 60.7
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 4.3e-121 439.5 446 58.7
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.0e-114 418.3 430 56.5
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 5.1e-114 416.0 702 41.2
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 5.2e-111 406.0 430 55.8
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.6e-107 394.4 430 55.1
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 5.1e-106 389.4 376 59.6
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.5e-105 387.9 385 57.1
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 4.3e-105 386.3 384 57.0
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.0e-102 377.5 703 41.1
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 2.6e-86 323.9 476 43.7
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 3.8e-85 320.1 467 44.3
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 8.4e-85 318.9 473 44.4
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.9e-84 317.8 485 43.5
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 5.4e-84 316.2 461 42.5
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.0e-82 312.0 474 43.5
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.3e-82 311.6 477 42.8
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 1.1e-81 308.5 487 43.1
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 4.3e-81 306.6 472 42.6
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 5.6e-81 306.2 474 42.4
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 5.6e-81 306.2 474 42.4
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.6e-80 304.7 488 42.4
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 2.8e-80 303.9 470 42.3
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 3.7e-80 303.5 484 41.9
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.1e-79 302.0 481 41.2
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.8e-79 301.2 447 42.7
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 4.0e-79 300.1 487 42.5
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 4.0e-79 300.1 479 41.1
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 2.0e-78 297.7 453 41.3
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.0e-78 297.7 488 39.5
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 4.5e-78 296.6 430 42.6
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.0e-77 295.4 474 39.9
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 1.7e-77 294.7 453 41.1
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.9e-76 291.2 469 41.6
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.9e-76 291.2 471 40.8
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 4.2e-76 290.0 470 40.6
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 4.2e-76 290.0 463 40.6
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 5.5e-76 289.7 455 40.0
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 5.5e-76 289.7 431 40.8
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 2.1e-75 287.7 476 40.1
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 2.7e-75 287.3 485 40.0
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 3.9e-74 283.5 470 39.8
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.1e-73 282.0 497 39.2
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.5e-73 281.6 488 40.0
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 5.7e-73 279.6 488 39.8
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 5.7e-73 279.6 475 38.3
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 9.6e-73 278.9 475 41.3
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.3e-72 278.5 488 39.3
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.3e-72 278.5 488 39.3
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 2.1e-72 277.7 465 39.1
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 6.2e-72 276.2 466 39.3
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 8.2e-72 275.8 439 39.9
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 8.2e-72 275.8 465 38.5
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 8.2e-72 275.8 482 37.8
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.8e-71 274.6 490 40.0
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.8e-71 274.6 454 40.5
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 4.0e-71 273.5 467 38.8
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 5.3e-71 273.1 494 39.1
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 5.3e-71 273.1 456 41.9
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 6.9e-71 272.7 482 37.6
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 1.5e-70 271.6 472 39.6
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.6e-70 270.8 482 38.8
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 4.5e-70 270.0 468 39.1
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 4.5e-70 270.0 490 37.6
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 7.6e-70 269.2 472 39.4
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 4.9e-69 266.5 457 37.9
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 6.5e-69 266.2 484 37.6
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 8.4e-69 265.8 465 38.7
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.5e-68 264.2 478 38.9
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.2e-68 263.8 475 38.9
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.5e-68 263.1 403 41.7
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 7.1e-68 262.7 476 38.0
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 1.2e-67 261.9 532 36.5
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.6e-67 261.5 454 37.0
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.6e-67 261.5 472 38.6
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 6.1e-67 259.6 486 37.2
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 7.9e-67 259.2 446 37.2
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.8e-66 258.1 445 37.1
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.8e-66 258.1 491 37.9
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 6.7e-66 256.1 456 36.6
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 8.7e-66 255.8 455 36.5
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 2.5e-65 254.2 445 37.8
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.3e-65 253.8 424 39.4
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 3.3e-65 253.8 487 38.6
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 7.4e-65 252.7 458 37.1
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 9.7e-65 252.3 456 37.9
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 3.7e-64 250.4 469 39.4
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.8e-64 250.0 521 35.9
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.3e-64 249.6 427 38.4
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 6.3e-64 249.6 468 39.7
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 8.2e-64 249.2 472 36.9
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.4e-63 248.4 464 37.9
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.4e-63 247.7 457 36.8
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.1e-63 246.9 439 39.9
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 4.1e-63 246.9 463 36.9
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 9.0e-63 245.7 444 36.9
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 9.0e-63 245.7 425 37.6
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 2.6e-62 244.2 430 37.2
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 6.5e-61 239.6 460 37.6
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 8.5e-61 239.2 460 35.7
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.1e-60 238.8 481 37.0
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 4.2e-60 236.9 465 34.8
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.2e-59 235.3 492 34.8
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 7.4e-57 226.1 429 35.7
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.2e-56 224.6 466 34.3
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 6.3e-56 223.0 425 37.4
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.2e-51 208.8 414 35.0
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 2.7e-51 207.6 480 32.9
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 2.0e-46 191.4 216 45.8
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.9e-45 187.6 174 55.7
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.1e-44 185.7 401 32.7
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 3.2e-44 184.1 133 61.7
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 8.0e-43 179.5 396 33.3
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.0e-42 179.1 385 36.1
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.0e-42 179.1 425 33.9
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 4.8e-40 170.2 163 55.2
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 5.3e-39 166.8 404 31.4
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 4.5e-38 163.7 292 41.4
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 6.1e-35 153.3 245 39.6
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.0e-34 152.5 314 35.0
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 3.0e-34 151.0 405 29.6
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 4.2e-28 130.6 531 25.6
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 9.4e-28 129.4 386 30.3
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 2.0e-25 121.7 247 33.2
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 7.5e-25 119.8 139 53.2
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 9.8e-25 119.4 160 51.2
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 9.8e-25 119.4 166 48.8
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 8.3e-24 116.3 303 35.0
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.8e-21 107.5 275 37.5
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.2e-19 102.4 192 34.9
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 1.0e-18 99.4 80 62.5
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.0e-18 97.8 130 51.5
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.9e-12 78.6 367 24.8
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 5.6e-12 77.0 72 40.3
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 2.1e-11 75.1 105 43.8
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 6.1e-11 73.6 105 42.9
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.0e-10 72.8 104 39.4
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 1.8e-10 72.0 142 30.3
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.5e-09 68.9 65 33.8
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 7.5e-09 66.6 478 23.2
BcaB06g28413 Brassica carinata HOM05D004295 ORTHO05D004901 4.9e-08 63.9 40 70.0
AagrBONN_evm.TU.Sc2ySwM_344.2808 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.1e-07 62.8 324 24.1
AagrBONN_evm.TU.Sc2ySwM_362.389 Anthoceros agrestis HOM05D000465 ORTHO05D000301 1.9e-07 62.0 74 40.5
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 1.9e-07 62.0 52 55.8
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 7.0e-07 60.1 64 34.4
Sp3g00610 Schrenkiella parvula HOM05D003353 ORTHO05D003751 9.2e-07 59.7 111 32.4
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 9.2e-07 59.7 128 30.5


User provided reference genes

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