Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.4e-59 233.0 114 100.0
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 3.2e-59 231.9 114 99.1
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 7.1e-59 230.7 114 97.4
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 3.3e-56 221.9 114 93.0
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 4.3e-56 221.5 114 93.0
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 1.3e-55 219.9 114 92.1
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 4.8e-55 218.0 114 90.4
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 4.8e-55 218.0 114 90.4
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 4.8e-55 218.0 114 90.4
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 4.8e-55 218.0 114 90.4
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 1.4e-54 216.5 114 90.4
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 6.9e-54 214.2 114 89.5
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 7.6e-53 210.7 113 87.6
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 7.6e-53 210.7 113 87.6
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 7.6e-53 210.7 113 87.6
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 2.2e-52 209.1 113 86.7
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 2.2e-52 209.1 109 89.9
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 2.2e-52 209.1 113 86.7
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 2.3e-49 199.1 114 84.2
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 2.8e-47 192.2 114 78.1
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 3.7e-47 191.8 114 78.9
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 6.2e-47 191.0 114 78.1
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 6.2e-47 191.0 114 79.8
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 3.1e-46 188.7 114 77.2
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 4.0e-46 188.3 114 76.3
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 6.9e-46 187.6 114 74.6
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 6.9e-46 187.6 114 74.6
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 6.9e-46 187.6 114 75.4
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 6.9e-46 187.6 114 75.4
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 9.0e-46 187.2 114 75.4
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 9.0e-46 187.2 114 75.4
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.2e-45 186.8 114 76.3
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.2e-45 186.8 114 76.3
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.6e-45 185.7 114 75.4
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 2.6e-45 185.7 114 75.4
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 2.6e-45 185.7 114 76.3
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 3.4e-45 185.3 116 76.7
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 7.6e-45 184.1 114 73.7
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 7.6e-45 184.1 114 73.7
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 7.6e-45 184.1 114 75.4
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 7.6e-45 184.1 114 75.4
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 7.6e-45 184.1 114 74.6
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.0e-44 183.7 114 74.6
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 1.3e-44 183.3 113 76.1
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 1.3e-44 183.3 114 75.4
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 1.3e-44 183.3 114 73.7
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 1.3e-44 183.3 114 73.7
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 2.2e-44 182.6 108 77.8
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 2.2e-44 182.6 116 73.3
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 2.2e-44 182.6 114 71.9
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 2.2e-44 182.6 114 73.7
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 2.9e-44 182.2 114 74.6
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 2.9e-44 182.2 114 71.9
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 3.8e-44 181.8 114 71.9
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 4.9e-44 181.4 114 74.6
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 6.5e-44 181.0 114 72.8
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 6.5e-44 181.0 113 72.6
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 8.4e-44 180.6 114 71.9
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 1.1e-43 180.3 114 73.7
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 1.9e-43 179.5 114 72.8
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 2.5e-43 179.1 114 72.8
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 2.5e-43 179.1 114 71.1
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 4.2e-43 178.3 114 69.3
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 5.5e-43 177.9 114 71.1
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 7.1e-43 177.6 114 73.7
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 7.1e-43 177.6 114 71.1
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 9.3e-43 177.2 114 72.8
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 1.2e-42 176.8 114 71.9
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 1.2e-42 176.8 114 71.9
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 1.2e-42 176.8 114 71.9
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 1.6e-42 176.4 114 72.8
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 1.6e-42 176.4 116 71.6
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 1.6e-42 176.4 114 71.1
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 2.1e-42 176.0 114 70.2
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 2.7e-42 175.6 122 70.5
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 4.6e-42 174.9 114 71.9
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 4.6e-42 174.9 114 71.1
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 4.6e-42 174.9 114 71.1
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 6.0e-42 174.5 114 71.9
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 7.9e-42 174.1 114 69.3
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 1.0e-41 173.7 114 69.3
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 1.0e-41 173.7 114 70.2
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 1.3e-41 173.3 114 69.3
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 1.3e-41 173.3 111 72.1
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 1.3e-41 173.3 114 69.3
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 1.8e-41 172.9 114 68.4
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 1.8e-41 172.9 114 71.1
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 2.3e-41 172.6 114 70.2
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.3e-41 172.6 114 70.2
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 2.3e-41 172.6 108 75.0
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 2.3e-41 172.6 114 70.2
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 3.0e-41 172.2 114 70.2
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 3.9e-41 171.8 114 67.5
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 3.9e-41 171.8 114 70.2
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 3.9e-41 171.8 108 75.0
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 3.9e-41 171.8 111 73.0
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 5.1e-41 171.4 108 73.1
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 6.7e-41 171.0 114 70.2
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 6.7e-41 171.0 114 71.1
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 6.7e-41 171.0 114 71.1
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 6.7e-41 171.0 114 71.1
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 8.7e-41 170.6 108 72.2
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 8.7e-41 170.6 113 68.1
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 8.7e-41 170.6 108 73.1
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 1.5e-40 169.9 114 71.1
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 1.9e-40 169.5 114 69.3
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 3.3e-40 168.7 114 65.8
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 7.4e-40 167.5 114 66.7
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 9.7e-40 167.2 96 83.3
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 1.6e-39 166.4 114 68.4
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 3.7e-39 165.2 107 72.0
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 4.8e-39 164.9 116 65.5
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 1.8e-38 162.9 107 67.3
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 1.8e-38 162.9 107 67.3
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 2.4e-38 162.5 114 67.5
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 6.9e-38 161.0 114 66.7
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 1.2e-37 160.2 105 72.4
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 1.3e-36 156.8 111 67.6
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 1.9e-35 152.9 122 65.6
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 4.6e-34 148.3 97 69.1
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 3.9e-33 145.2 96 71.9
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 3.3e-32 142.1 90 72.2
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 2.2e-31 139.4 93 67.7
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 1.3e-28 130.2 105 60.0
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 1.7e-28 129.8 104 66.3
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 3.6e-26 122.1 107 59.8
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 3.9e-25 118.6 59 91.5
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 6.7e-25 117.9 105 57.1
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 1.1e-24 117.1 114 55.3
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 1.5e-21 106.7 94 55.3
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 2.6e-21 105.9 67 70.1
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 1.1e-19 100.5 59 72.9
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.1e-19 100.5 114 45.6
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 1.1e-19 100.5 100 52.0
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 7.2e-19 97.8 64 75.0
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 9.4e-19 97.4 105 47.6
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 6.1e-18 94.7 70 61.4
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 1.4e-17 93.6 73 60.3
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 1.7e-15 86.7 57 71.9
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 2.2e-15 86.3 57 70.2
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 5.9e-13 78.2 55 70.9
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 5.9e-13 78.2 111 41.4
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 6.5e-12 74.7 101 40.6
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 9.4e-11 70.9 75 50.7
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 1.2e-10 70.5 54 66.7
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 2.7e-10 69.3 59 52.5
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 3.6e-10 68.9 82 48.8
A08p09670 Brassica napus HOM05D005190 ORTHO05D006183 2.2e-07 59.7 50 62.0


User provided reference genes

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