Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 1.9e-187 659.1 343 100.0
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 4.9e-175 617.8 345 93.3
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 1.4e-174 616.3 343 92.4
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 3.7e-167 591.7 343 88.9
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 6.0e-165 584.3 346 89.0
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 8.6e-164 580.5 332 90.1
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 4.3e-163 578.2 332 89.8
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 4.3e-163 578.2 332 89.8
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 8.0e-162 573.9 346 87.6
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 6.8e-161 570.9 343 87.8
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 1.5e-160 569.7 346 88.4
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 4.9e-159 564.7 346 86.7
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 2.9e-151 538.9 382 76.2
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 2.7e-141 505.8 301 85.4
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 3.4e-128 462.2 305 75.4
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 1.4e-126 456.8 327 70.3
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 2.7e-125 452.6 310 74.2
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 3.5e-125 452.2 358 67.9
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 2.3e-124 449.5 302 74.8
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 3.9e-124 448.7 330 71.2
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 5.1e-124 448.4 310 73.9
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 4.3e-123 445.3 320 70.9
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 5.6e-123 444.9 303 73.9
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 1.6e-122 443.4 321 70.1
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 2.8e-122 442.6 339 68.1
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 4.8e-122 441.8 353 66.0
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 6.2e-122 441.4 330 70.0
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 6.2e-122 441.4 320 71.6
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 8.1e-122 441.0 324 70.7
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 1.8e-121 439.9 338 68.0
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 3.1e-121 439.1 318 72.0
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 6.9e-121 438.0 338 67.8
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 1.5e-120 436.8 340 65.6
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 2.0e-120 436.4 326 72.1
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 2.6e-120 436.0 304 74.3
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 4.5e-120 435.3 304 74.0
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 2.2e-119 433.0 318 69.2
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 2.2e-119 433.0 335 66.9
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 3.8e-119 432.2 327 66.7
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 4.9e-119 431.8 312 70.2
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 6.4e-119 431.4 325 67.7
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 1.4e-118 430.3 318 68.9
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 1.4e-118 430.3 340 67.4
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 7.1e-118 427.9 314 70.4
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 2.7e-117 426.0 342 65.5
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 4.6e-117 425.2 332 65.7
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 4.6e-117 425.2 332 65.4
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 6.0e-117 424.9 334 65.6
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 7.9e-117 424.5 292 72.6
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 7.9e-117 424.5 292 71.6
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 1.0e-116 424.1 292 71.6
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.0e-116 424.1 344 65.7
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 1.0e-116 424.1 330 65.8
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 1.0e-116 424.1 292 71.9
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 1.3e-116 423.7 292 71.9
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 2.3e-116 422.9 326 67.5
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 2.3e-116 422.9 308 69.5
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 3.0e-116 422.5 292 71.9
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 5.1e-116 421.8 291 72.9
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.5e-115 420.2 360 63.1
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 1.9e-115 419.9 326 64.7
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 4.3e-115 418.7 338 62.7
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 5.6e-115 418.3 324 66.0
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 9.6e-115 417.5 302 70.5
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 1.3e-114 417.2 294 72.4
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.3e-114 417.2 288 72.2
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 1.6e-114 416.8 322 64.9
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 1.6e-114 416.8 300 68.7
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 6.2e-114 414.8 300 69.0
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 1.1e-113 414.1 313 67.7
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 1.4e-113 413.7 314 69.7
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 6.0e-109 398.3 323 65.6
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 1.8e-108 396.7 300 67.7
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 2.3e-108 396.4 303 65.0
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 1.9e-107 393.3 289 70.9
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 4.8e-106 388.7 347 62.8
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 6.3e-106 388.3 320 63.8
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 3.1e-105 386.0 291 71.1
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 1.2e-104 384.0 265 73.6
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 7.7e-104 381.3 279 69.2
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 4.2e-102 375.6 458 47.8
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 1.2e-101 374.0 295 62.4
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 7.9e-101 371.3 279 66.7
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 1.8e-97 360.1 480 45.6
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 3.4e-96 355.9 332 59.6
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 2.9e-95 352.8 365 55.6
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 5.5e-94 348.6 314 58.9
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 2.7e-93 346.3 265 62.6
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 2.7e-93 346.3 244 72.5
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 2.8e-90 336.3 563 40.1
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 6.3e-90 335.1 233 73.0
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 5.3e-89 332.0 234 68.8
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 1.7e-87 327.0 278 58.6
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 3.8e-87 325.9 289 59.2
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 5.0e-87 325.5 228 69.3
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 5.5e-86 322.0 321 53.6
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 2.3e-84 316.6 240 69.2
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 5.2e-84 315.5 290 56.6
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 7.0e-81 305.1 200 74.5
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 1.3e-79 300.8 291 53.6
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 1.7e-79 300.4 350 51.1
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 7.5e-75 285.0 184 76.1
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.3e-58 231.1 190 63.7
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 7.0e-57 225.3 142 76.1
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 2.0e-56 223.8 190 58.9
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 1.7e-55 220.7 168 64.3
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 6.6e-55 218.8 308 41.9
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 2.5e-54 216.9 197 60.4
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 2.4e-49 200.3 314 37.9
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 2.7e-48 196.8 193 50.8
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 5.0e-47 192.6 109 91.7
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 1.1e-46 191.4 200 53.5
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 1.5e-46 191.0 315 40.0
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 9.5e-38 161.8 92 92.4
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 1.7e-34 151.0 214 42.1
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 3.6e-29 133.3 213 37.6
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 5.8e-27 125.9 100 64.0
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.3e-23 114.8 84 65.5
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 3.0e-23 113.6 82 65.9
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 3.1e-20 103.6 135 47.4
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 4.0e-20 103.2 54 94.4
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 1.3e-18 98.2 72 63.9
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 3.3e-14 83.6 170 32.4
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 2.1e-13 80.9 55 65.5
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 6.2e-13 79.3 108 46.3
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 9.9e-11 72.0 58 65.5
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.9e-10 69.7 58 63.8
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.9e-10 69.7 58 63.8
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.9e-10 69.7 58 63.8
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.9e-10 69.7 58 63.8
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 6.4e-10 69.3 58 63.8
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 8.4e-10 68.9 85 50.6
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.2e-09 67.0 58 62.1
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 1.1e-06 58.5 38 76.3
Psat2g069600 Pisum sativum HOM05D000263 ORTHO05D009363 2.5e-06 57.4 44 63.6


User provided reference genes

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