Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 2.4e-215 751.9 374 100.0
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 2.6e-166 589.0 332 88.9
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 5.9e-166 587.8 330 87.9
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 7.7e-166 587.4 330 88.2
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 2.2e-165 585.9 332 87.0
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 2.9e-165 585.5 329 88.8
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.9e-165 585.5 329 86.9
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 1.4e-164 583.2 331 87.0
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 1.4e-162 576.6 332 87.3
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 6.7e-162 574.3 332 87.0
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 3.3e-161 572.0 336 85.7
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 2.2e-160 569.3 332 86.4
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 2.8e-160 568.9 332 86.4
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 5.2e-154 548.1 330 80.0
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.1e-153 547.0 316 85.4
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.1e-151 540.4 291 92.8
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 6.7e-146 521.2 332 76.8
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 4.8e-144 515.0 346 74.3
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 1.6e-142 510.0 335 72.5
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 7.7e-142 507.7 348 70.7
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 2.2e-141 506.1 370 67.6
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 1.1e-140 503.8 348 69.8
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 2.5e-140 502.7 353 68.6
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 3.2e-140 502.3 328 72.0
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.2e-139 500.4 353 70.0
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 1.6e-139 500.0 338 73.7
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 2.1e-139 499.6 329 70.5
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 6.1e-139 498.0 328 71.6
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 1.0e-138 497.3 356 69.7
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.8e-138 496.5 349 69.3
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 3.0e-138 495.7 328 72.3
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 1.2e-137 493.8 329 71.4
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 3.4e-137 492.3 324 72.2
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 4.4e-137 491.9 349 68.8
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 4.8e-136 488.4 338 68.3
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 4.8e-136 488.4 332 70.5
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 8.3e-136 487.6 323 70.6
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.8e-135 486.5 363 66.4
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.4e-135 486.1 329 71.1
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 5.4e-135 485.0 333 70.0
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 9.1e-135 484.2 273 87.9
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 9.1e-135 484.2 359 65.2
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 2.7e-134 482.6 356 66.6
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 5.9e-134 481.5 355 66.2
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 2.3e-133 479.6 329 69.9
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.9e-133 479.2 337 68.8
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 8.6e-133 477.6 356 66.0
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.5e-132 474.9 350 66.9
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 2.1e-131 473.0 317 70.0
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 2.8e-131 472.6 343 65.9
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 2.8e-131 472.6 331 68.0
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 3.6e-131 472.2 321 69.5
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.7e-131 471.9 316 72.2
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 6.1e-131 471.5 340 67.4
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.0e-130 470.7 353 65.7
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 2.3e-130 469.5 330 67.9
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 5.2e-130 468.4 330 67.6
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 2.6e-129 466.1 324 68.2
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 3.4e-129 465.7 328 64.9
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 4.4e-129 465.3 328 64.6
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 5.7e-129 464.9 359 63.8
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 2.4e-127 459.5 338 66.3
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 3.1e-127 459.1 346 63.9
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 5.4e-127 458.4 334 65.6
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 7.0e-127 458.0 324 67.0
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 7.0e-127 458.0 366 63.4
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 4.5e-126 455.3 323 68.1
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 5.0e-125 451.8 307 70.4
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 5.6e-124 448.4 332 64.2
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.1e-123 446.4 239 90.0
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 8.9e-122 441.0 319 67.4
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 1.5e-121 440.3 308 68.5
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 4.4e-121 438.7 330 64.8
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 4.4e-121 438.7 330 64.8
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 9.8e-121 437.6 342 63.5
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 8.3e-120 434.5 347 61.1
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 1.1e-119 434.1 325 63.7
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 1.4e-119 433.7 317 66.2
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.4e-119 433.0 330 64.8
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 2.4e-119 433.0 325 63.4
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 4.1e-119 432.2 325 64.6
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 5.4e-119 431.8 347 60.8
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 9.2e-119 431.0 357 59.9
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 2.7e-118 429.5 320 63.4
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 3.5e-118 429.1 329 63.2
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 2.3e-117 426.4 320 64.1
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 8.6e-117 424.5 324 65.1
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 2.5e-116 422.9 330 63.3
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 7.3e-116 421.4 329 64.1
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 1.4e-114 417.2 398 52.8
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 4.0e-114 415.6 328 63.4
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 5.2e-114 415.2 293 67.2
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 5.8e-113 411.8 322 60.2
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.4e-111 406.4 323 62.8
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 9.2e-111 404.4 324 62.0
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 2.1e-110 403.3 569 42.0
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 6.0e-110 401.7 286 67.1
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 6.0e-110 401.7 364 56.9
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 7.8e-110 401.4 271 68.6
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 7.8e-110 401.4 271 68.6
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 2.3e-109 399.8 255 76.1
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 5.1e-109 398.7 316 60.4
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 1.1e-108 397.5 291 65.3
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 2.1e-107 393.3 326 59.5
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 1.8e-106 390.2 331 56.8
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.9e-103 380.2 264 66.3
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 1.6e-102 377.1 272 63.2
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 2.7e-102 376.3 310 59.4
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 2.7e-102 376.3 332 57.2
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 6.6e-101 371.7 322 56.2
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 2.0e-97 360.1 319 55.2
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 4.4e-97 359.0 205 86.3
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 9.9e-97 357.8 328 57.6
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.1e-95 354.4 296 60.1
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 1.9e-95 353.6 268 60.4
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 7.1e-95 351.7 353 53.0
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 3.9e-93 345.9 248 67.7
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 5.1e-93 345.5 344 53.8
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 1.2e-91 340.9 324 51.9
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 1.7e-85 320.5 300 53.0
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 2.8e-83 313.2 327 47.1
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 4.0e-82 309.3 197 73.6
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 1.3e-75 287.7 176 77.8
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.2e-70 271.2 195 65.1
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 2.1e-67 260.4 360 43.1
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.0e-65 253.8 304 45.7
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 2.6e-65 253.4 245 50.2
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 7.6e-65 251.9 209 58.4
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 6.5e-64 248.8 288 42.0
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 8.5e-56 221.9 256 44.9
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 7.2e-55 218.8 278 41.0
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 4.3e-52 209.5 157 61.8
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 5.7e-52 209.1 201 54.7
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.4e-52 208.8 166 59.0
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 3.7e-51 206.5 210 55.2
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 1.8e-50 204.1 208 55.3
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 6.9e-50 202.2 139 67.6
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 4.4e-44 183.0 286 35.7
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 6.3e-43 179.1 129 65.9
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.1e-36 158.3 164 49.4
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 4.8e-35 152.9 297 36.4
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 5.5e-31 139.4 79 81.0
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 6.8e-29 132.5 118 51.7
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 3.0e-21 107.1 260 28.5
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.5e-20 104.8 89 57.3
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.5e-20 104.8 89 57.3
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 4.4e-20 103.2 116 45.7
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 1.8e-18 97.8 181 33.1
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 1.7e-16 91.3 57 75.4
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 8.0e-14 82.4 48 81.2
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.8e-13 81.3 112 44.6
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 8.9e-13 79.0 74 52.7
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 2.3e-08 64.3 66 51.5
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 9.5e-07 58.9 43 58.1


User provided reference genes

Program Settings