Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 1.1e-119 433.3 221 100.0
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 1.0e-117 426.8 222 99.1
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 3.9e-117 424.9 221 97.3
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 3.6e-115 418.3 221 95.9
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 1.1e-114 416.8 221 95.9
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 9.0e-114 413.7 219 95.0
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 7.6e-113 410.6 221 93.7
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 7.6e-113 410.6 221 93.7
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 7.6e-113 410.6 221 93.7
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 7.6e-113 410.6 221 93.7
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 2.2e-112 409.1 221 93.2
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 7.9e-110 400.6 223 91.5
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 3.3e-108 395.2 223 88.3
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 9.6e-108 393.7 222 91.4
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 6.9e-106 387.5 222 89.6
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 6.9e-106 387.5 222 89.6
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 2.0e-105 386.0 222 90.1
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 2.0e-105 386.0 222 90.1
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 1.3e-104 383.3 227 87.2
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 6.4e-104 380.9 222 89.2
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 8.4e-104 380.6 221 88.7
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 2.1e-102 375.9 221 87.8
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 5.5e-95 351.3 227 80.2
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.6e-94 349.7 227 79.7
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 2.7e-94 349.0 227 79.7
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 6.0e-94 347.8 226 79.2
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 3.9e-93 345.1 230 78.7
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 5.1e-93 344.7 229 79.0
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 6.7e-93 344.4 225 78.7
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 6.7e-93 344.4 225 78.7
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 8.7e-93 344.0 232 77.6
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 2.5e-92 342.4 229 78.6
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 3.3e-92 342.0 225 78.2
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 4.3e-92 341.7 224 78.1
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 7.4e-92 340.9 178 94.9
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 2.1e-91 339.3 231 77.5
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 4.8e-91 338.2 228 77.6
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 1.4e-90 336.7 226 77.4
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 9.0e-90 334.0 229 76.0
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 1.5e-89 333.2 230 74.8
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 7.6e-89 330.9 230 74.3
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 7.6e-89 330.9 228 75.4
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 1.3e-88 330.1 228 74.6
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 2.2e-88 329.3 225 74.7
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 2.9e-88 328.9 228 73.7
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 3.8e-88 328.6 232 75.4
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 3.8e-88 328.6 230 77.0
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 5.0e-88 328.2 225 76.0
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 6.5e-88 327.8 232 74.6
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 8.4e-88 327.4 225 74.2
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 1.9e-87 326.2 230 74.8
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 2.5e-87 325.9 225 76.4
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 2.5e-87 325.9 225 73.8
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 7.2e-87 324.3 226 74.3
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 7.2e-87 324.3 226 73.9
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 7.2e-87 324.3 226 73.9
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 9.3e-87 323.9 229 75.1
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 1.2e-86 323.6 228 74.1
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 1.6e-86 323.2 229 74.7
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 1.6e-86 323.2 229 75.5
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 1.6e-86 323.2 227 73.6
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 2.1e-86 322.8 231 72.3
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 3.6e-86 322.0 226 73.9
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 3.6e-86 322.0 224 73.7
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 4.6e-86 321.6 228 73.7
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 6.1e-86 321.2 229 73.4
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 6.1e-86 321.2 229 74.7
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 7.9e-86 320.9 228 74.6
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 7.9e-86 320.9 229 75.5
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.3e-85 320.1 225 73.8
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 2.3e-85 319.3 233 74.2
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 2.3e-85 319.3 231 72.3
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 3.9e-85 318.5 228 73.7
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 3.9e-85 318.5 228 73.7
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 5.1e-85 318.2 230 73.0
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 5.1e-85 318.2 179 84.9
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 6.7e-85 317.8 226 74.3
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 6.7e-85 317.8 232 73.7
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 8.7e-85 317.4 229 71.2
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 8.7e-85 317.4 229 75.1
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 1.1e-84 317.0 231 73.2
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 1.5e-84 316.6 228 73.2
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 3.3e-84 315.5 230 73.0
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 4.3e-84 315.1 226 73.5
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 5.7e-84 314.7 224 72.3
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 7.4e-84 314.3 225 72.4
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 7.4e-84 314.3 235 69.8
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 7.4e-84 314.3 229 72.5
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 1.3e-83 313.5 231 71.4
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 1.3e-83 313.5 229 70.7
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 6.3e-83 311.2 229 71.6
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 1.1e-82 310.5 222 71.6
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 1.4e-82 310.1 230 73.5
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 1.4e-82 310.1 226 70.8
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 1.8e-82 309.7 226 74.3
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 5.3e-82 308.1 228 71.9
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 5.3e-82 308.1 228 71.5
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 9.0e-82 307.4 221 70.6
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 2.0e-81 306.2 231 71.4
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 3.4e-81 305.4 230 70.4
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 4.5e-81 305.1 202 78.2
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 4.5e-81 305.1 227 69.6
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 4.5e-81 305.1 228 71.1
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 5.9e-81 304.7 226 70.4
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 7.7e-81 304.3 232 69.8
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 7.7e-81 304.3 168 85.1
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 7.7e-81 304.3 168 85.1
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 1.7e-80 303.1 233 69.1
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 2.9e-80 302.4 231 71.0
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 6.5e-80 301.2 234 68.8
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 4.2e-79 298.5 237 66.7
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 5.5e-79 298.1 234 67.9
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 1.6e-78 296.6 229 66.8
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 5.1e-77 291.6 157 89.2
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 5.1e-77 291.6 214 72.0
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 4.3e-76 288.5 209 69.4
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 9.1e-74 280.8 224 65.6
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 1.2e-73 280.4 189 73.0
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 4.5e-73 278.5 229 65.1
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 1.2e-70 270.4 200 72.0
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 4.2e-63 245.4 229 62.4
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 5.5e-63 245.0 222 58.6
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 3.6e-62 242.3 225 61.8
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 3.6e-62 242.3 169 68.0
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 6.1e-62 241.5 201 61.2
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.4e-61 240.4 202 61.9
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 4.4e-60 235.3 200 59.5
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 6.3e-59 231.5 230 55.2
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 3.5e-57 225.7 219 59.8
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 5.9e-57 224.9 210 56.2
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 8.0e-54 214.5 209 56.5
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 5.9e-49 198.4 151 72.2
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 1.6e-46 190.3 209 48.3
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 3.0e-45 186.0 155 58.1
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.9e-39 166.8 149 65.1
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 2.2e-35 153.3 172 46.5
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 3.3e-31 139.4 77 77.9
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 3.5e-25 119.4 125 62.4
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 3.0e-24 116.3 60 85.0
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 3.3e-23 112.8 129 58.9
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 4.4e-20 102.4 140 45.7
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 8.1e-14 81.6 108 53.7
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 1.7e-08 63.9 44 72.7


User provided reference genes

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