Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 7.2e-49 196.8 93 100.0
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 4.3e-41 171.0 91 92.3
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.5e-38 162.5 77 100.0
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.5e-38 162.5 77 100.0
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 1.5e-38 162.5 77 100.0
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 1.5e-38 162.5 77 100.0
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 1.5e-38 162.5 77 100.0
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 1.5e-38 162.5 77 100.0
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 4.4e-38 161.0 77 98.7
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 5.8e-38 160.6 77 98.7
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 3.2e-36 154.8 77 94.8
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 3.2e-36 154.8 77 94.8
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 3.2e-36 154.8 77 94.8
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 3.2e-36 154.8 77 94.8
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 3.2e-36 154.8 77 94.8
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 3.2e-36 154.8 77 94.8
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 3.2e-36 154.8 77 94.8
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 3.2e-36 154.8 77 94.8
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 5.4e-36 154.1 77 93.5
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 5.4e-36 154.1 77 93.5
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 5.4e-36 154.1 77 93.5
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 5.4e-36 154.1 77 93.5
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 5.4e-36 154.1 77 93.5
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.2e-35 152.9 77 93.5
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.2e-35 152.9 77 93.5
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 1.2e-35 152.9 77 93.5
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 1.6e-35 152.5 76 94.7
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 2.0e-35 152.1 77 93.5
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 2.7e-35 151.8 77 93.5
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 2.7e-35 151.8 77 93.5
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.7e-35 151.8 77 92.2
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.8e-35 150.2 76 93.4
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.8e-35 150.2 76 93.4
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 77 92.2
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 77 92.2
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 77 92.2
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 77 92.2
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 77 92.2
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 77 92.2
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 77 92.2
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 77 92.2
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 77 92.2
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 77 92.2
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 77 92.2
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 1.3e-34 149.4 77 92.2
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 1.3e-34 149.4 76 93.4
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 1.3e-34 149.4 76 93.4
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 2.3e-34 148.7 76 92.1
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 2.3e-34 148.7 76 92.1
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 3.0e-34 148.3 76 92.1
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 6.6e-34 147.1 76 90.8
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 8.6e-34 146.7 77 90.9
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 1.5e-33 146.0 76 92.1
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 1.9e-33 145.6 77 90.9
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 1.9e-33 145.6 77 90.9
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.6e-33 144.1 76 90.8
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.3e-33 143.7 76 88.2
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.6e-32 142.5 75 86.7
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 4.7e-32 141.0 76 88.2
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.2e-32 140.6 76 88.2
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 8.1e-32 140.2 77 87.0
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 8.1e-32 140.2 77 87.0
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 8.1e-32 140.2 77 87.0
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 8.1e-32 140.2 77 87.0
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.1e-31 139.8 77 87.0
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.4e-31 139.4 77 84.4
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 1.8e-31 139.0 74 86.5
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 4.0e-31 137.9 76 86.8
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 5.2e-31 137.5 76 88.2
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 6.8e-31 137.1 93 71.0
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 8.9e-31 136.7 76 84.2
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.0e-30 135.6 66 95.5
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.4e-30 134.4 76 84.2
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 4.4e-30 134.4 69 91.3
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 4.4e-30 134.4 69 91.3
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.8e-30 134.0 76 82.9
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.8e-30 134.0 76 85.5
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.2e-29 132.1 77 83.1
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.4e-29 130.6 93 73.1
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.4e-29 130.6 93 73.1
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.4e-29 130.6 93 73.1
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 8.3e-29 130.2 76 82.9
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 1.1e-28 129.8 64 93.8
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-28 129.4 66 90.9
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.4e-28 128.6 65 90.8
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 2.4e-28 128.6 65 89.2
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.1e-28 127.1 63 93.7
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 1.2e-27 126.3 65 90.8
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 2.7e-27 125.2 66 87.9
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 7.8e-27 123.6 87 72.4
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 2.3e-26 122.1 67 88.1
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.0e-26 121.7 63 90.5
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 3.0e-26 121.7 77 79.2
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 6.6e-26 120.6 71 78.9
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 1.9e-25 119.0 76 77.6
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 2.1e-24 115.5 82 70.7
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.8e-24 115.2 78 75.6
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 6.2e-24 114.0 62 85.5
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.1e-23 113.2 61 86.9
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 2.3e-23 112.1 73 71.2
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 2.3e-23 112.1 62 83.9
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 6.8e-23 110.5 57 89.5
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 5.8e-22 107.5 53 92.5
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 7.6e-22 107.1 55 89.1
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.9e-21 104.4 57 86.0
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 4.9e-21 104.4 62 82.3
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 1.6e-19 99.4 77 68.8
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.9e-17 92.4 46 93.5
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 2.5e-17 92.0 48 89.6
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 2.5e-17 92.0 44 93.2
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 3.3e-17 91.7 50 84.0
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 1.2e-16 89.7 44 90.9
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 4.7e-16 87.8 46 89.1
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 3.1e-15 85.1 56 73.2
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 3.1e-15 85.1 43 88.4
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 1.2e-14 83.2 66 63.6
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 1.3e-13 79.7 42 90.5
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 3.8e-13 78.2 44 86.4
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.1e-12 76.6 41 90.2
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 1.4e-12 76.3 67 62.7
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.4e-12 76.3 37 89.2
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 9.3e-12 73.6 40 82.5
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.7e-10 69.3 37 86.5
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 2.3e-10 68.9 38 81.6
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 3.9e-10 68.2 32 93.8
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 3.9e-10 68.2 45 77.8
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-09 65.1 39 79.5
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 5.6e-09 64.3 30 93.3
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.3e-09 63.9 32 90.6
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 2.1e-08 62.4 29 96.6
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.8e-08 62.0 29 93.1
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 8.1e-08 60.5 29 93.1
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 1.4e-07 59.7 55 56.4
Cc06_g21660 Coffea canephora HOM05D000540 ORTHO05D008899 2.0e-06 55.8 49 51.0
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 3.4e-06 55.1 24 100.0


User provided reference genes

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