Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 0.0e+00 2057.0 1097 100.0
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 0.0e+00 1922.5 1076 93.2
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 0.0e+00 1747.6 1077 86.2
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 0.0e+00 1725.3 1081 84.3
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 0.0e+00 1655.6 1079 83.3
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 0.0e+00 1618.6 1079 79.8
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 0.0e+00 1576.6 1079 78.3
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 0.0e+00 1569.7 1083 78.1
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 0.0e+00 1567.4 1079 78.5
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 0.0e+00 1426.0 1035 75.7
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 0.0e+00 1358.2 1079 72.8
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 0.0e+00 1249.6 769 87.8
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 2.4e-234 816.6 1140 45.2
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 6.6e-232 808.5 1205 43.2
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 4.4e-228 795.8 1198 44.6
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 8.3e-227 791.6 1193 44.7
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 8.3e-227 791.6 1223 42.7
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 1.7e-224 783.9 1133 44.7
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 3.9e-224 782.7 1155 44.5
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 2.8e-222 776.5 1177 43.4
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 8.3e-219 765.0 1367 40.2
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.9e-218 763.8 1213 42.0
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.0e-218 761.9 1249 41.6
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 2.7e-217 760.0 1156 41.7
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 6.8e-213 745.3 1262 40.5
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 2.6e-212 743.4 1287 39.3
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 3.4e-212 743.0 1246 40.3
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 7.5e-212 741.9 1323 40.7
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 8.3e-211 738.4 1304 40.1
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 5.4e-210 735.7 1332 40.2
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 2.1e-209 733.8 1287 40.0
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 1.1e-202 711.4 1287 39.7
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 5.1e-200 702.6 1208 40.5
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 5.8e-196 689.1 1301 38.9
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.7e-195 687.6 1147 41.4
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 1.4e-194 684.5 1329 37.6
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 5.4e-194 682.6 1236 38.3
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 6.0e-193 679.1 1220 39.8
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 1.3e-190 671.4 1254 38.9
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 4.0e-189 666.4 1306 39.1
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 6.9e-189 665.6 1142 41.7
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 1.0e-184 651.7 1330 37.4
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 6.7e-184 649.0 1338 37.4
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 8.7e-184 648.7 1296 37.8
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 1.1e-183 648.3 1403 34.7
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 1.1e-183 648.3 1341 36.7
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 4.3e-183 646.4 1267 38.1
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 3.1e-181 640.2 1317 36.3
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 1.2e-180 638.3 1340 36.9
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 2.9e-179 633.6 1389 34.7
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 7.1e-178 629.0 1378 34.8
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 2.7e-177 627.1 1318 36.1
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 1.0e-176 625.2 1295 36.4
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 1.9e-175 620.9 1342 34.9
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 3.3e-175 620.2 1353 35.3
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 4.3e-175 619.8 1297 36.2
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 1.3e-174 618.2 1308 36.6
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.1e-174 617.5 1380 35.2
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 3.2e-170 603.6 1181 37.8
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 5.5e-170 602.8 1270 36.1
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 9.3e-170 602.1 1296 36.7
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 2.7e-169 600.5 1302 36.3
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 1.8e-165 587.8 1080 38.4
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 6.9e-165 585.9 1310 35.0
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 9.0e-165 585.5 1093 40.0
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.5e-164 584.7 1067 37.4
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 7.2e-162 575.9 1366 35.1
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 8.8e-160 568.9 1081 36.8
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 1.7e-158 564.7 836 42.9
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 2.8e-158 563.9 914 39.8
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 6.3e-158 562.8 775 43.2
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 2.0e-156 557.8 1258 34.9
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 6.5e-155 552.7 1241 35.6
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 7.4e-151 539.3 750 43.3
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 1.1e-149 535.4 1238 34.7
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 1.8e-149 534.6 1210 35.1
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 1.1e-146 525.4 1115 35.2
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 7.2e-146 522.7 1191 34.5
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 1.3e-142 511.9 1219 34.4
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 3.1e-141 507.3 1162 36.6
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 2.6e-140 504.2 1235 34.5
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 6.5e-139 499.6 1347 31.6
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 1.6e-137 495.0 1221 33.0
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 2.0e-132 478.0 1064 33.0
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 2.2e-131 474.6 1253 33.0
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 6.1e-129 466.5 1221 31.9
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 3.0e-128 464.2 1027 33.3
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 2.4e-125 454.5 737 38.8
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 5.4e-85 320.5 550 38.4
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 1.1e-80 306.2 823 30.6
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 3.8e-78 297.7 1040 27.5
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 5.4e-69 267.3 629 34.3
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 4.8e-65 254.2 766 30.9
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 2.4e-64 251.9 484 41.5
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 4.0e-64 251.1 291 49.8
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 9.3e-61 240.0 309 51.1
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 7.4e-58 230.3 346 40.8
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 4.6e-52 211.1 265 51.3
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 7.9e-52 210.3 275 42.9
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 6.7e-51 207.2 152 62.5
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.7e-49 201.4 670 32.8
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 3.1e-48 198.4 353 35.7
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 5.0e-46 191.0 165 65.5
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 6.3e-41 174.1 88 92.0
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 4.1e-40 171.4 345 40.9
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 1.1e-37 163.3 675 25.8
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 2.1e-36 159.1 102 67.6
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 1.1e-34 153.3 820 22.7
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.3e-33 149.8 405 30.9
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.6e-31 142.1 96 75.0
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 1.0e-30 140.2 200 43.0
AL4G14580 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 2.9e-30 138.7 93 81.7
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 5.0e-30 137.9 142 49.3
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 2.3e-27 129.0 153 44.4
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 5.2e-27 127.9 649 23.4
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 2.6e-26 125.6 253 35.2
AL4G14240 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 4.8e-25 121.3 82 80.5
AL5G19250 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 1.8e-24 119.4 82 80.5
AL2G19550 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 3.5e-23 115.2 149 51.7
BcaB03g13969 Brassica carinata HOM05D001879 ORTHO05D007648 9.4e-21 107.1 187 43.9
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 1.6e-15 89.7 131 38.9
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 9.4e-13 80.5 146 34.2
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.7e-12 79.0 61 57.4
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.4e-11 76.6 77 44.2
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 3.0e-11 75.5 77 42.9
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 9.8e-10 70.5 126 32.5
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.8e-09 68.9 54 51.9
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 3.7e-09 68.6 215 27.9
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 4.1e-08 65.1 113 46.9
Actinidia22689 Actinidia chinensis HOM05D001879 ORTHO05D007648 1.6e-07 63.2 71 50.7
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 1.3e-06 60.1 74 36.5


User provided reference genes

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