Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1623.2 783 100.0
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1486.5 791 90.8
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1384.8 792 84.7
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1370.5 788 84.8
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1361.7 784 84.9
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1348.2 732 89.5
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1337.4 792 82.7
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1330.1 794 82.1
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1323.5 825 79.3
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1304.3 781 80.5
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1300.0 783 80.7
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1278.8 796 79.6
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1248.4 779 76.5
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1241.9 778 75.8
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1239.6 779 75.6
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1229.5 811 73.2
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1228.4 785 75.0
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1225.7 783 74.6
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1224.5 786 74.6
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1222.2 817 72.6
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1219.9 785 74.3
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1207.6 779 73.3
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1191.0 794 72.3
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1138.3 779 71.2
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1137.5 804 69.8
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1094.7 773 65.8
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1090.5 773 65.5
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1087.4 773 65.3
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1084.7 781 64.9
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1083.9 773 65.3
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1078.2 773 64.8
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1077.4 773 64.9
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1076.6 779 64.8
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 5.4e-312 1074.3 772 64.5
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 5.4e-312 1073.5 772 64.8
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 1.1e-311 1073.2 779 64.7
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 3.7e-311 1071.2 771 63.9
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 4.8e-311 1070.8 771 63.9
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 4.1e-310 1067.8 775 64.4
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 5.8e-309 1063.9 781 63.5
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 7.6e-309 1063.5 775 63.2
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 2.2e-308 1062.0 774 63.7
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 3.8e-308 1061.2 773 64.6
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 8.4e-308 1060.1 783 63.0
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 1.4e-307 1059.3 781 63.9
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 1.8e-305 1052.4 778 62.6
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 2.3e-305 1052.0 779 62.3
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 3.9e-305 1051.2 781 62.4
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 3.9e-305 1051.2 781 62.5
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.1e-304 1049.7 783 62.6
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 1.1e-304 1049.7 771 64.1
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 2.5e-304 1048.5 790 62.0
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 5.7e-304 1047.3 791 62.6
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 8.2e-303 1043.5 775 62.3
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 9.0e-302 1040.0 782 62.8
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 2.0e-301 1038.9 772 61.7
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 2.0e-301 1038.9 779 62.6
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 3.4e-301 1038.1 774 61.6
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 4.5e-301 1037.7 809 60.9
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 2.5e-299 1031.9 802 60.8
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 2.7e-298 1028.5 776 61.2
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 1.8e-297 1025.8 781 62.2
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 3.0e-297 1025.0 772 61.7
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 5.1e-297 1024.2 779 60.7
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 5.1e-297 1024.2 778 62.3
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 8.8e-297 1023.5 777 60.6
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 1.5e-296 1022.7 748 63.2
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 9.7e-296 1020.0 783 61.6
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 2.2e-295 1018.8 778 62.0
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 2.8e-295 1018.5 774 62.1
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 1.4e-294 1016.1 735 64.2
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 1.8e-294 1015.8 779 61.1
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 3.1e-294 1015.0 787 60.2
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 4.1e-294 1014.6 775 60.4
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 2.6e-293 1011.9 771 60.7
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 1.7e-292 1009.2 775 59.9
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 1.4e-291 1006.1 765 61.8
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 1.9e-291 1005.7 775 59.6
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 2.5e-291 1005.4 775 60.3
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 5.5e-291 1004.2 899 54.8
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 4.7e-290 1001.1 736 63.9
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 4.7e-290 1001.1 775 59.7
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.1e-290 1000.7 774 59.7
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 1.4e-289 999.6 775 60.0
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 1.8e-289 999.2 775 59.6
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 6.7e-289 997.3 776 60.1
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 1.5e-288 996.1 771 60.1
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.0e-288 995.7 775 59.6
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 4.4e-288 994.6 774 61.4
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 1.3e-287 993.0 777 60.4
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 1.7e-287 992.6 776 59.3
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 2.8e-287 991.9 778 60.5
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 7.0e-286 987.3 782 63.0
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 2.0e-285 985.7 775 58.8
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 1.0e-284 983.4 774 59.6
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 8.5e-284 980.3 778 59.0
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 1.0e-281 973.4 777 58.0
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 6.7e-281 970.7 771 58.1
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.7e-279 966.1 795 58.0
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 1.8e-278 962.6 754 59.0
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 9.1e-278 960.3 787 57.9
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 1.6e-277 959.5 776 59.3
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 3.5e-277 958.4 771 58.2
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 5.9e-277 957.6 777 58.4
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 1.5e-275 953.0 779 58.2
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 5.2e-273 944.5 728 61.5
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.5e-272 943.0 779 58.5
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 2.6e-272 942.2 771 55.4
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.4e-270 936.4 772 55.2
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.8e-270 936.0 807 59.5
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 1.5e-267 926.4 719 60.8
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 3.6e-266 921.8 763 57.7
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 7.5e-264 914.1 774 56.2
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.7e-263 912.9 836 53.8
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 4.5e-261 904.8 770 56.1
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 3.3e-259 898.7 804 53.5
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 1.8e-257 892.9 692 62.3
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 1.6e-250 869.8 771 53.8
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 2.3e-249 865.9 792 54.0
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 5.8e-240 834.7 784 56.4
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 6.2e-234 814.7 474 78.7
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 1.6e-229 800.0 803 48.9
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.5e-224 783.5 798 48.1
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 6.7e-212 741.5 574 60.6
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 1.1e-209 734.2 778 46.5
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.0e-204 716.1 615 56.4
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 7.4e-203 711.4 670 57.3
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 1.3e-202 710.7 791 44.4
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.8e-186 656.4 528 58.1
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 8.2e-186 654.8 432 67.8
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 2.9e-183 646.4 666 47.6
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.9e-182 643.7 447 64.0
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 7.2e-182 641.7 663 51.3
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 3.7e-170 602.8 579 57.0
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.9e-158 563.9 427 60.4
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 4.4e-155 552.7 508 51.2
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 2.7e-152 543.5 865 36.0
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 9.5e-150 535.0 448 56.7
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.6e-149 534.3 504 51.6
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 7.1e-121 439.1 321 61.1
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 1.6e-109 401.4 270 68.5
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 4.8e-101 373.2 829 33.7
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.9e-98 364.0 341 52.8
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 6.0e-96 356.3 329 53.2
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 4.3e-94 350.1 363 50.1
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 5.6e-94 349.7 695 33.1
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 1.7e-82 311.6 243 59.7
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.4e-81 308.5 335 47.8
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.1e-78 298.9 513 33.9
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 4.2e-73 280.4 316 47.2
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 3.0e-71 274.2 311 46.6
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 5.5e-65 253.4 202 59.9
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 1.5e-49 202.2 137 66.4
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 9.4e-49 199.5 135 64.4
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.3e-45 189.1 101 78.2
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.5e-42 176.8 169 49.7
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 9.8e-38 162.9 99 74.7
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 1.1e-36 159.5 193 44.6
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 2.8e-24 118.2 81 64.2
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 4.7e-24 117.5 87 64.4
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 8.3e-21 106.7 70 71.4
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 3.3e-17 94.7 83 49.4
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 4.7e-16 90.9 60 68.3
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 3.1e-15 88.2 53 73.6
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 5.2e-15 87.4 95 45.3
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 6.8e-15 87.0 52 75.0
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 8.9e-15 86.7 70 54.3
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 2.0e-14 85.5 157 34.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.4e-14 84.7 96 49.0
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.4e-14 84.7 96 49.0
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.9e-12 79.0 40 82.5
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 7.0e-12 77.0 39 84.6
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.2e-11 76.3 45 66.7
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 3.9e-10 71.2 44 68.2
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 1.6e-08 65.9 76 44.7
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 5.2e-07 60.8 45 60.0


User provided reference genes

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