Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 3.1e-187 658.3 327 100.0
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 9.7e-173 610.1 327 91.7
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 9.7e-173 610.1 327 91.7
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 9.7e-173 610.1 327 91.7
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 9.7e-173 610.1 327 91.7
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 6.5e-169 597.4 330 88.5
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.8e-158 562.8 329 84.5
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 2.3e-158 562.4 331 84.3
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 7.7e-154 547.4 329 83.6
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 8.0e-151 537.3 332 81.3
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 4.4e-149 531.6 330 82.1
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 1.8e-147 526.2 362 75.7
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 9.1e-147 523.9 364 75.3
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 3.5e-146 521.9 364 75.3
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 1.8e-134 483.0 347 70.6
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 1.2e-130 470.3 332 70.8
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 2.5e-112 409.5 324 63.9
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 9.5e-112 407.5 298 66.8
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 1.2e-111 407.1 300 67.0
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 1.2e-111 407.1 304 66.1
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 2.1e-111 406.4 326 62.0
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.1e-111 406.4 324 63.9
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 3.6e-111 405.6 303 63.0
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 4.7e-111 405.2 302 64.9
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 3.1e-110 402.5 290 66.9
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 8.9e-110 401.0 304 63.8
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 1.2e-109 400.6 304 64.1
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.2e-109 400.6 336 61.6
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 2.0e-109 399.8 302 64.9
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 2.0e-109 399.8 301 63.8
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.6e-109 399.4 336 61.3
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 5.8e-109 398.3 303 64.4
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 5.8e-109 398.3 324 62.7
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.7e-108 396.7 324 60.8
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.7e-108 396.7 324 60.8
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 1.7e-108 396.7 304 63.8
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 3.7e-108 395.6 298 62.8
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 3.7e-108 395.6 335 61.5
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.4e-108 394.8 324 60.5
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 1.1e-107 394.0 298 64.4
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 1.9e-107 393.3 303 65.0
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 2.1e-106 389.8 323 59.8
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 3.5e-106 389.0 299 63.9
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 3.5e-106 389.0 325 60.3
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 4.6e-106 388.7 298 64.1
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 7.8e-106 387.9 306 61.1
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 1.3e-105 387.1 317 60.3
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 3.9e-105 385.6 324 58.0
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 1.9e-104 383.3 312 59.6
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 5.6e-104 381.7 304 63.8
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 5.6e-104 381.7 328 59.5
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 1.2e-103 380.6 316 58.9
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 2.3e-102 376.3 303 60.4
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 8.9e-102 374.4 299 60.9
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 1.5e-101 373.6 291 63.6
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 1.5e-101 373.6 307 61.6
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 2.0e-101 373.2 303 59.1
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 2.0e-101 373.2 303 60.4
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 2.6e-101 372.9 298 62.8
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 5.8e-101 371.7 317 58.0
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 3.7e-100 369.0 311 59.2
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 3.2e-99 365.9 303 59.1
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 2.7e-98 362.8 289 61.2
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 4.6e-98 362.1 303 58.7
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 6.0e-98 361.7 306 56.5
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 1.3e-97 360.5 304 57.2
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 5.1e-97 358.6 322 56.2
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 1.5e-96 357.1 306 55.6
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 4.3e-96 355.5 301 59.5
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 5.6e-96 355.1 303 57.4
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 1.4e-94 350.5 298 57.7
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 3.2e-91 339.3 310 55.2
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 6.0e-90 335.1 288 56.9
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 6.0e-90 335.1 405 46.2
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 2.3e-89 333.2 287 58.9
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 2.3e-89 333.2 285 57.9
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 5.1e-89 332.0 288 55.9
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 9.6e-88 327.8 313 55.6
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.3e-87 327.4 319 53.0
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 3.4e-85 319.3 310 52.6
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 3.8e-84 315.8 307 51.1
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 7.1e-83 311.6 241 64.7
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 1.2e-82 310.8 284 55.3
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 1.3e-79 300.8 241 61.4
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 1.3e-79 300.8 297 51.5
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 2.0e-77 293.5 286 50.7
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 5.8e-77 292.0 238 62.6
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 2.9e-76 289.7 278 55.0
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 1.9e-75 287.0 207 65.7
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 1.3e-73 280.8 216 63.4
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 3.9e-73 279.3 276 51.8
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 5.6e-72 275.4 261 54.8
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 1.3e-63 247.7 244 51.2
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 2.8e-63 246.5 292 46.6
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 1.4e-62 244.2 325 45.5
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 2.4e-62 243.4 205 56.1
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 5.8e-61 238.8 231 51.1
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.0e-60 238.0 216 56.9
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 5.1e-57 225.7 240 50.8
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.7e-56 222.2 207 55.6
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.4e-56 221.9 207 55.1
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.3e-55 221.1 206 55.3
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.8e-55 219.9 206 54.9
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.7e-55 219.5 189 60.8
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.1e-54 218.0 206 54.9
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.8e-54 217.2 185 60.5
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.1e-54 216.1 181 61.3
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 1.4e-51 207.6 138 81.9
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.0e-48 197.2 157 62.4
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 4.8e-47 192.6 188 53.7
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.4e-45 186.4 153 61.4
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 2.2e-44 183.7 282 40.4
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 3.2e-43 179.9 301 38.2
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.0e-41 174.9 216 46.8
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.3e-40 169.9 105 71.4
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.4e-40 169.5 105 71.4
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 7.7e-37 158.7 103 64.1
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 3.6e-34 149.8 208 44.7
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 2.3e-33 147.1 203 42.9
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 8.8e-33 145.2 102 65.7
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.4e-32 142.1 137 56.2
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.7e-31 141.0 108 67.6
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.0e-30 135.6 116 62.9
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 4.5e-29 132.9 271 33.2
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 2.6e-24 117.1 288 32.6
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 3.7e-23 113.2 106 54.7
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 3.2e-19 100.1 77 64.9
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 3.2e-19 100.1 77 64.9
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 8.0e-18 95.5 62 62.9
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 8.0e-10 68.9 42 69.0
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.4e-06 58.2 39 74.4


User provided reference genes

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