Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 5.1e-157 557.8 292 100.0
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 6.9e-154 547.4 292 97.6
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 9.6e-148 526.9 296 93.2
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 3.0e-141 505.4 293 90.8
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 2.8e-139 498.8 298 90.3
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 2.8e-139 498.8 298 89.9
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 4.8e-139 498.0 298 89.9
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.4e-138 496.5 298 89.6
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 6.9e-138 494.2 321 84.1
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.8e-136 488.4 294 88.8
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 9.3e-135 483.8 296 87.8
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 3.7e-131 471.9 301 85.7
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 8.4e-128 460.7 303 82.8
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 1.1e-119 433.7 245 91.8
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.7e-115 419.9 303 77.9
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 1.6e-110 403.3 214 97.2
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.3e-107 393.7 212 95.8
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 2.5e-103 379.4 297 73.7
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 1.5e-100 370.2 302 72.5
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 1.0e-96 357.5 337 62.9
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 1.5e-95 353.6 262 74.8
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 2.5e-95 352.8 267 71.9
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 5.5e-95 351.7 265 72.8
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.2e-94 350.5 329 62.0
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 1.2e-94 350.5 263 73.8
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 4.0e-93 345.5 267 71.2
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 4.0e-93 345.5 267 71.2
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 6.8e-93 344.7 229 81.2
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 1.2e-92 344.0 232 79.3
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 1.5e-92 343.6 229 81.2
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 3.4e-92 342.4 229 80.8
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 4.4e-92 342.0 309 63.4
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 5.7e-92 341.7 222 79.3
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 9.8e-92 340.9 230 80.9
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 4.8e-91 338.6 264 70.1
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 4.8e-91 338.6 264 70.1
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 6.3e-91 338.2 203 83.3
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 6.3e-91 338.2 221 80.5
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 6.3e-91 338.2 230 78.7
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 8.3e-91 337.8 222 78.4
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 8.3e-91 337.8 229 77.3
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 1.1e-90 337.4 262 69.5
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 1.4e-90 337.0 229 78.6
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 1.8e-90 336.7 266 68.8
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 1.8e-90 336.7 266 70.3
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 2.4e-90 336.3 296 66.6
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 3.1e-90 335.9 227 78.4
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 5.4e-90 335.1 220 78.6
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 9.1e-90 334.3 220 80.5
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 1.2e-89 334.0 312 64.1
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 1.2e-89 334.0 277 67.9
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 1.6e-89 333.6 273 68.1
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 1.6e-89 333.6 229 78.2
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 2.0e-89 333.2 206 83.5
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 3.5e-89 332.4 253 70.8
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 5.9e-89 331.6 267 68.5
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 7.7e-89 331.3 223 78.5
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 1.0e-88 330.9 220 78.2
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 1.3e-88 330.5 261 70.9
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 1.7e-88 330.1 222 76.1
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 3.8e-88 328.9 268 67.2
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 3.8e-88 328.9 204 82.8
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 5.0e-88 328.6 221 78.3
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 5.0e-88 328.6 222 78.8
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.1e-87 327.4 302 65.2
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 1.1e-87 327.4 232 75.4
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 1.5e-87 327.0 260 69.2
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.5e-87 327.0 260 69.2
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 1.5e-87 327.0 206 79.6
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 1.5e-87 327.0 221 78.3
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 1.5e-87 327.0 220 78.2
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 1.5e-87 327.0 220 78.2
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 2.5e-87 326.2 220 78.6
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 3.2e-87 325.9 234 75.6
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 7.2e-87 324.7 256 70.7
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 9.5e-87 324.3 221 77.4
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 1.2e-86 323.9 193 83.4
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.6e-86 323.6 260 67.7
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.6e-86 323.6 260 68.1
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.6e-86 323.6 230 74.3
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 2.7e-86 322.8 206 81.6
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 3.6e-86 322.4 204 79.4
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.6e-86 322.4 221 77.4
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 4.7e-86 322.0 221 76.9
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 8.0e-86 321.2 221 76.0
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 8.0e-86 321.2 209 79.4
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 1.4e-85 320.5 218 77.1
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.4e-85 320.5 290 63.8
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 2.3e-85 319.7 311 63.7
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 3.0e-85 319.3 221 75.6
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 4.0e-85 318.9 221 75.6
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 4.0e-85 318.9 229 75.5
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 6.8e-85 318.2 219 76.3
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 1.2e-84 317.4 206 80.1
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 2.0e-84 316.6 206 79.1
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 2.0e-84 316.6 193 83.4
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 7.5e-84 314.7 222 73.4
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 2.2e-83 313.2 237 71.3
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 2.2e-83 313.2 213 75.6
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 5.4e-82 308.5 209 76.1
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 7.0e-82 308.1 183 84.7
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 9.2e-82 307.8 205 75.6
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 9.2e-82 307.8 241 69.7
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 3.6e-78 295.8 289 59.5
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 9.8e-76 287.7 166 88.0
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 7.3e-71 271.6 209 71.3
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 3.6e-70 269.2 223 66.4
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 5.2e-69 265.4 213 64.8
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 6.8e-69 265.0 206 70.4
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 3.3e-63 246.1 211 60.2
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 8.1e-62 241.5 220 56.4
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 6.4e-59 231.9 143 81.1
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 9.9e-52 208.0 162 62.3
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 1.4e-50 204.1 210 51.9
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 1.2e-49 201.1 208 51.9
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 1.1e-47 194.5 180 53.3
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 4.3e-47 192.6 225 45.8
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 6.9e-45 185.3 177 53.1
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 3.5e-41 172.9 115 80.0
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 6.9e-37 158.7 144 62.5
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 1.1e-31 141.4 159 54.7
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 6.0e-25 119.0 149 38.3
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 1.1e-21 108.2 65 83.1
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 3.5e-17 93.2 53 86.8
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 2.3e-16 90.5 76 65.8
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 3.7e-14 83.2 103 57.3


User provided reference genes

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