Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G35710 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 4.5e-90 334.7 187 100.0
AT1G22250 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 1.8e-78 296.2 187 81.8
Carub.0001s2180 Capsella rubella HOM05D002704 ORTHO05D002891 1.5e-66 256.5 189 81.0
Sp1g19760 Schrenkiella parvula HOM05D002704 ORTHO05D002891 2.5e-64 249.2 187 72.7
BcaC06g34946 Brassica carinata HOM05D002704 ORTHO05D002891 3.0e-62 242.3 187 74.9
C07p21480 Brassica napus HOM05D002704 ORTHO05D002891 3.0e-62 242.3 187 74.9
BolC7t42674H Brassica oleracea HOM05D002704 ORTHO05D002891 3.0e-62 242.3 187 74.9
Thhalv10008815m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 8.8e-62 240.7 186 71.5
A07p14590 Brassica napus HOM05D002704 ORTHO05D002891 1.3e-60 236.9 187 73.3
BraA07t29205Z Brassica rapa HOM05D002704 ORTHO05D002891 3.7e-60 235.3 187 72.7
BcaB03g14223 Brassica carinata HOM05D002704 ORTHO05D002891 6.3e-60 234.6 185 71.9
BcaB03g14224 Brassica carinata HOM05D002704 ORTHO05D002891 6.3e-60 234.6 185 71.9
A09p42520 Brassica napus HOM05D002704 ORTHO05D002891 1.4e-59 233.4 187 69.0
BraA09t39728Z Brassica rapa HOM05D002704 ORTHO05D002891 1.4e-59 233.4 187 69.0
BolC5t30835H Brassica oleracea HOM05D002704 ORTHO05D002891 1.4e-51 206.8 184 65.8
BcaB07g32247 Brassica carinata HOM05D002704 ORTHO05D002891 2.2e-49 199.5 187 63.1
C05p21380 Brassica napus HOM05D002704 ORTHO05D002891 6.5e-49 198.0 166 68.7
BcaC05g26153 Brassica carinata HOM05D002704 ORTHO05D002891 3.1e-43 179.1 166 64.5
Aa31LG7G6190 Aethionema arabicum HOM05D002704 ORTHO05D002891 5.0e-41 171.8 205 52.7
CARHR022620 Cardamine hirsuta HOM05D002704 ORTHO05D002891 2.8e-39 166.0 129 70.5
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.4e-35 153.7 215 49.8
Sp5g33290 Schrenkiella parvula HOM05D002704 ORTHO05D002891 9.2e-35 151.0 216 47.2
AT1G78170 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 7.8e-34 147.9 213 46.9
CARHR071630 Cardamine hirsuta HOM05D002704 ORTHO05D002891 6.6e-33 144.8 216 46.3
AL2G38480 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.1e-32 144.1 208 46.6
A07p27670 Brassica napus HOM05D002704 ORTHO05D002891 3.3e-32 142.5 215 44.7
BraA07t30408Z Brassica rapa HOM05D002704 ORTHO05D002891 2.1e-31 139.8 211 46.0
BcaC08g47392 Brassica carinata HOM05D002704 ORTHO05D002891 3.6e-31 139.0 210 47.6
C06p52120 Brassica napus HOM05D002704 ORTHO05D002891 3.6e-31 139.0 210 47.6
BolC6t40235H Brassica oleracea HOM05D002704 ORTHO05D002891 3.6e-31 139.0 210 47.6
BcaB03g15984 Brassica carinata HOM05D002704 ORTHO05D002891 4.4e-29 132.1 216 41.7
Carub.0002s2506 Capsella rubella HOM05D002704 ORTHO05D002891 7.5e-29 131.3 210 42.9
BcaC08g45431 Brassica carinata HOM05D002704 ORTHO05D002891 6.4e-28 128.3 231 41.6
C06p30640 Brassica napus HOM05D002704 ORTHO05D002891 6.4e-28 128.3 231 41.6
BolC6t38228H Brassica oleracea HOM05D002704 ORTHO05D002891 6.4e-28 128.3 231 41.6
BcaB05g25124 Brassica carinata HOM05D002704 ORTHO05D002891 1.1e-27 127.5 217 39.2
Aa31LG4G8210 Aethionema arabicum HOM05D002704 ORTHO05D002891 1.6e-26 123.6 211 45.5
BcaB02g07152 Brassica carinata HOM05D002704 ORTHO05D002891 1.3e-25 120.6 229 38.4
A07p43470 Brassica napus HOM05D002704 ORTHO05D002891 3.0e-25 119.4 207 40.6
BraA07t31860Z Brassica rapa HOM05D002704 ORTHO05D002891 3.0e-25 119.4 207 40.6
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 9.5e-24 114.4 218 42.7
BraA02t07210Z Brassica rapa HOM05D002704 ORTHO05D002891 3.1e-22 109.4 210 38.1
A02p22080 Brassica napus HOM05D002704 ORTHO05D002891 2.2e-20 103.2 213 36.2
BolC2t09563H Brassica oleracea HOM05D002704 ORTHO05D002891 3.7e-20 102.4 207 39.1
THA.LOC104800151 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 1.4e-19 100.5 213 42.7
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 2.5e-16 89.7 83 57.8
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 4.3e-16 89.0 81 60.5
CARHR022610 Cardamine hirsuta HOM05D002704 ORTHO05D002891 2.8e-15 86.3 57 80.7
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 2.8e-15 86.3 76 59.2
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 6.2e-15 85.1 74 59.5
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 2.3e-14 83.2 82 56.1
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 2.3e-14 83.2 89 50.6
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 3.1e-14 82.8 97 47.4
Glyma.14G172800 Glycine max HOM05D002704 ORTHO05D002891 4.0e-14 82.4 90 48.9
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 8.9e-14 81.3 106 45.3
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 8.9e-14 81.3 108 41.7
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 1.2e-13 80.9 74 56.8
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 1.5e-13 80.5 90 47.8
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.0e-13 80.1 73 54.8
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.6e-13 79.7 86 51.2
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 2.6e-13 79.7 110 42.7
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 3.4e-13 79.3 73 54.8
A01p24680 Brassica napus HOM05D002704 ORTHO05D002891 4.4e-13 79.0 101 46.5
BraA01t02380Z Brassica rapa HOM05D002704 ORTHO05D002891 4.4e-13 79.0 101 46.5
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 5.8e-13 78.6 82 54.9
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 5.8e-13 78.6 82 54.9
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 5.8e-13 78.6 82 54.9
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 9.9e-13 77.8 82 53.7
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 9.9e-13 77.8 82 52.4
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 1.3e-12 77.4 72 55.6
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.7e-12 77.0 70 57.1
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 1.7e-12 77.0 82 53.7
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 2.2e-12 76.6 95 48.4
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 2.2e-12 76.6 74 55.4
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.9e-12 76.3 82 52.4
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 2.9e-12 76.3 89 46.1
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 2.9e-12 76.3 52 67.3
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 3.7e-12 75.9 79 50.6
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 3.7e-12 75.9 204 32.4
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 4.9e-12 75.5 166 36.1
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 6.4e-12 75.1 88 45.5
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 8.4e-12 74.7 73 53.4
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 8.4e-12 74.7 77 51.9
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 8.4e-12 74.7 106 44.3
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 8.4e-12 74.7 75 50.7
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 8.4e-12 74.7 78 50.0
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.9e-11 73.6 71 56.3
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 1.9e-11 73.6 74 55.4
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 1.9e-11 73.6 100 43.0
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 3.2e-11 72.8 56 60.7
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 4.1e-11 72.4 71 56.3
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 5.4e-11 72.0 100 45.0
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 5.4e-11 72.0 70 54.3
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 5.4e-11 72.0 79 48.1
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea HOM05D002704 ORTHO05D002891 7.1e-11 71.6 59 61.0
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea HOM05D002704 ORTHO05D002891 7.1e-11 71.6 59 61.0
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 7.1e-11 71.6 64 54.7
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 7.1e-11 71.6 60 58.3
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 9.2e-11 71.2 67 50.7
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 1.2e-10 70.9 70 57.1
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 1.2e-10 70.9 97 42.3
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea HOM05D002704 ORTHO05D002891 1.6e-10 70.5 69 53.6
CiPaw.07G180300 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.6e-10 70.5 80 50.0
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 1.6e-10 70.5 68 50.0
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 1.6e-10 70.5 53 62.3
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 2.1e-10 70.1 86 45.3
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 2.7e-10 69.7 192 32.3
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 3.5e-10 69.3 87 50.6
unitig_578.g16200 Utricularia gibba HOM05D002704 ORTHO05D002891 3.5e-10 69.3 53 60.4
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 4.6e-10 68.9 85 47.1
Nitab4.5_0002098g0040 Nicotiana tabacum HOM05D002704 ORTHO05D002891 4.6e-10 68.9 63 52.4
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.3e-09 67.4 44 65.9
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 1.3e-09 67.4 67 50.7
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 1.7e-09 67.0 64 53.1
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 2.3e-09 66.6 81 45.7
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 2.3e-09 66.6 67 50.7
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 2.3e-09 66.6 81 46.9
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 3.0e-09 66.2 44 63.6
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 3.0e-09 66.2 44 63.6
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 3.0e-09 66.2 171 35.7
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 3.9e-09 65.9 44 63.6
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 3.9e-09 65.9 62 51.6
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 5.1e-09 65.5 72 47.2
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 5.1e-09 65.5 52 59.6
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 5.1e-09 65.5 72 47.2
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 8.6e-09 64.7 48 64.6
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 8.6e-09 64.7 44 61.4
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 8.6e-09 64.7 97 43.3
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 8.6e-09 64.7 71 52.1
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 8.6e-09 64.7 53 56.6
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 8.6e-09 64.7 44 61.4
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 1.1e-08 64.3 62 51.6
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.1e-08 64.3 41 70.7
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.9e-08 63.5 37 73.0
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 1.9e-08 63.5 65 47.7
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 2.5e-08 63.2 91 41.8
unitig_578.g16524 Utricularia gibba HOM05D002704 ORTHO05D002891 2.5e-08 63.2 98 36.7
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 3.3e-08 62.8 193 28.5
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 4.3e-08 62.4 63 47.6
Migut.N02898 Erythranthe guttata HOM05D002704 ORTHO05D002891 4.3e-08 62.4 61 59.0
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 5.6e-08 62.0 49 57.1
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 9.6e-08 61.2 71 47.9
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 1.2e-07 60.8 40 65.0
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 1.6e-07 60.5 40 65.0
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 2.1e-07 60.1 41 65.9
THA.LOC104816761 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 2.1e-07 60.1 80 50.0
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 2.8e-07 59.7 51 56.9
CARHR259930 Cardamine hirsuta HOM05D002704 ORTHO05D002891 3.6e-07 59.3 58 50.0
AT4G08910 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 4.7e-07 58.9 36 69.4
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 8.1e-07 58.2 51 54.9
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 8.1e-07 58.2 81 42.0
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 1.1e-06 57.8 64 50.0
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 1.1e-06 57.8 64 50.0
Sp6g08890 Schrenkiella parvula HOM05D002704 ORTHO05D002891 3.1e-06 56.2 35 68.6
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 3.1e-06 56.2 76 43.4
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 5.2e-06 55.5 50 48.0
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 5.2e-06 55.5 83 41.0
Carub.0006s2748 Capsella rubella HOM05D002704 ORTHO05D002891 6.8e-06 55.1 36 63.9
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 6.8e-06 55.1 41 58.5
AL6G41650 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 8.9e-06 54.7 179 27.9
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 8.9e-06 54.7 41 58.5
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 8.9e-06 54.7 30 73.3


User provided reference genes

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