Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 0.0e+00 3913.2 2167 100.0
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 0.0e+00 3167.9 2021 86.4
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 0.0e+00 2683.3 2252 70.9
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 0.0e+00 2597.0 2057 71.9
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 0.0e+00 2519.2 2251 67.5
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 0.0e+00 2517.7 2212 68.4
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 0.0e+00 2277.7 2106 64.7
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 0.0e+00 2272.3 2106 64.6
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 0.0e+00 1913.7 2211 57.6
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 0.0e+00 1845.1 2198 54.7
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 0.0e+00 1841.6 2198 54.6
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 0.0e+00 1776.9 2205 53.4
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 0.0e+00 1766.9 2206 53.3
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 0.0e+00 1716.0 2327 50.5
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 0.0e+00 1308.5 2261 44.3
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 4.7e-292 1009.2 1656 45.4
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 2.9e-201 707.6 1432 41.6
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 4.4e-165 587.4 2193 31.8
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 8.1e-159 566.6 2122 31.4
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 5.3e-158 563.9 2217 31.2
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 1.1e-155 556.2 2133 31.8
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 3.2e-155 554.7 2245 29.0
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.1e-152 546.2 2124 30.5
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 4.3e-152 544.3 844 47.9
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 7.4e-152 543.5 2084 31.5
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.2e-149 536.2 820 49.3
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 2.6e-149 535.0 2134 31.2
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 2.6e-149 535.0 2104 31.8
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 4.2e-147 527.7 2090 31.8
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 5.5e-147 527.3 2223 31.4
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 5.6e-144 517.3 2064 31.7
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.6e-143 515.8 2112 31.0
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 2.8e-143 515.0 2070 31.5
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 3.1e-142 511.5 2105 31.1
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 4.0e-142 511.1 890 46.0
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 2.0e-141 508.8 775 48.8
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 4.5e-141 507.7 2091 31.7
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 5.8e-141 507.3 2166 31.5
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 1.7e-140 505.8 2152 31.5
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 1.2e-138 499.6 925 42.4
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.6e-138 497.7 925 42.3
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 4.6e-138 497.7 916 43.1
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 7.9e-138 496.9 782 48.1
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.3e-137 495.4 926 42.4
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.9e-137 494.6 926 42.2
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 2.8e-135 488.4 847 45.8
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 1.8e-134 485.7 2104 30.6
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 3.1e-134 485.0 873 44.7
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 5.3e-134 484.2 909 44.6
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 6.9e-134 483.8 912 42.5
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.0e-132 479.9 925 41.9
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 1.0e-132 479.9 1026 40.6
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 3.8e-132 478.0 723 50.2
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 6.5e-132 477.2 776 48.8
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 1.4e-131 476.1 2161 30.0
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 3.2e-131 474.9 877 43.7
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.8e-129 469.2 745 48.1
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 1.8e-129 469.2 2264 30.5
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 1.5e-128 466.1 746 47.9
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 1.7e-127 462.6 2158 31.1
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 1.7e-127 462.6 827 45.8
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 8.2e-127 460.3 2006 31.3
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 3.1e-126 458.4 1998 30.8
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 9.1e-126 456.8 823 43.9
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 3.8e-124 451.4 2018 30.3
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 1.8e-121 442.6 914 42.0
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 3.0e-121 441.8 2072 30.5
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 5.1e-121 441.0 441 65.3
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 3.3e-120 438.3 756 45.9
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 4.4e-120 438.0 1944 29.5
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 9.7e-120 436.8 1940 31.2
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 2.2e-119 435.6 1933 28.6
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 5.3e-118 431.0 850 42.9
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 5.9e-117 427.6 713 47.8
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 5.5e-115 421.0 2074 30.3
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 4.7e-114 417.9 864 42.8
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.0e-113 416.8 722 46.5
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 4.8e-111 407.9 788 44.5
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 4.1e-110 404.8 690 46.8
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 3.5e-109 401.7 873 38.6
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 1.3e-108 399.8 726 45.5
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 1.9e-107 396.0 929 40.4
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 5.5e-107 394.4 730 45.3
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.6e-106 392.9 612 44.4
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 6.1e-106 391.0 833 42.5
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 1.8e-105 389.4 941 39.0
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 1.3e-100 373.2 869 38.7
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 1.9e-99 369.4 729 42.9
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 5.2e-97 361.3 2144 25.9
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.1e-94 353.6 918 38.7
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.2e-93 350.1 466 54.3
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 2.9e-92 345.5 628 38.9
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 4.7e-90 338.2 819 37.5
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 4.4e-88 331.6 744 41.4
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 7.5e-88 330.9 766 39.9
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 7.5e-88 330.9 2061 28.2
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 2.2e-87 329.3 676 42.0
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 1.4e-86 326.6 679 42.4
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 4.5e-85 321.6 829 39.0
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 4.5e-85 321.6 935 35.7
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 2.3e-84 319.3 2074 27.2
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 1.5e-83 316.6 2209 27.4
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 4.6e-77 295.0 495 42.0
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 5.0e-76 291.6 888 35.0
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 3.6e-74 285.4 1944 26.4
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 1.8e-73 283.1 635 36.7
BraA06t24858Z Brassica rapa HOM05D000237 ORTHO05D006530 1.3e-71 276.9 259 63.3
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 1.7e-71 276.6 819 36.5
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 1.4e-70 273.5 579 43.2
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 2.7e-69 269.2 335 55.5
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 3.9e-68 265.4 255 54.5
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.7e-61 242.7 257 52.1
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 1.3e-60 240.4 2268 25.6
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 4.7e-50 205.3 224 52.7
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 5.3e-49 201.8 549 38.8
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 8.4e-47 194.5 253 57.3
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 1.7e-44 186.8 491 36.5
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.7e-34 152.5 568 31.0
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 3.1e-33 149.4 136 59.6
BcaC04g19090 Brassica carinata HOM05D001762 ORTHO05D001774 1.5e-32 147.1 106 70.8
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 2.5e-30 139.8 93 74.2
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 6.0e-29 135.2 756 30.7
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.5e-27 130.6 1772 22.9
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 3.1e-25 122.9 767 24.9
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 4.0e-25 122.5 325 31.7
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 5.8e-24 118.6 153 44.4
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 7.7e-16 91.7 319 32.3
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 1.7e-15 90.5 94 56.4
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 6.5e-15 88.6 253 29.6
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 9.4e-14 84.7 311 32.8
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 4.6e-13 82.4 203 50.2
BcaB03g12812 Brassica carinata HOM05D000237 ORTHO05D006530 2.3e-12 80.1 65 66.2
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 5.7e-11 75.5 119 37.8
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 8.2e-10 71.6 105 46.7
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 1.8e-09 70.5 442 26.2
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.8e-09 70.5 644 26.4
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 2.9e-07 63.2 140 33.6
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 5.0e-07 62.4 133 37.6


User provided reference genes

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