Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 4.8e-108 394.4 189 100.0
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 5.0e-105 384.4 189 97.4
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 2.5e-104 382.1 189 96.3
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 4.2e-104 381.3 189 94.7
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 3.1e-99 365.2 189 91.0
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 4.1e-99 364.8 189 91.0
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 2.0e-98 362.5 189 89.9
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 5.9e-98 360.9 189 89.4
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 5.9e-98 360.9 189 89.4
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 1.1e-96 356.7 190 88.9
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 4.2e-96 354.8 189 87.3
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 1.1e-88 330.1 189 79.4
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 1.9e-80 302.8 190 72.6
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 5.5e-80 301.2 190 74.2
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 5.5e-80 301.2 190 74.2
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 5.5e-80 301.2 189 74.1
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.1e-79 299.3 190 73.7
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 1.0e-78 297.0 189 73.0
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 1.2e-77 293.5 190 74.2
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 1.5e-77 293.1 188 72.9
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 3.7e-76 288.5 190 68.9
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 3.7e-76 288.5 190 71.1
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 4.9e-76 288.1 190 70.5
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 4.9e-76 288.1 186 72.0
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 6.3e-76 287.7 190 72.1
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 6.3e-76 287.7 188 72.9
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 6.3e-76 287.7 190 71.1
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 1.1e-75 287.0 189 70.4
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 1.4e-75 286.6 186 73.1
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 1.4e-75 286.6 190 69.5
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 1.8e-75 286.2 190 71.1
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 3.1e-75 285.4 190 68.4
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 3.1e-75 285.4 191 68.1
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 5.4e-75 284.6 191 68.1
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 5.4e-75 284.6 186 71.5
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 5.4e-75 284.6 186 70.4
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 5.4e-75 284.6 186 70.4
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 5.4e-75 284.6 187 71.1
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 7.0e-75 284.3 186 70.4
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 7.0e-75 284.3 186 70.4
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 7.0e-75 284.3 187 70.1
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 7.0e-75 284.3 186 70.4
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 7.0e-75 284.3 186 69.9
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 1.2e-74 283.5 190 68.9
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 1.6e-74 283.1 190 68.9
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.6e-74 283.1 186 71.0
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.6e-74 283.1 186 69.4
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 2.0e-74 282.7 187 69.5
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 3.5e-74 282.0 189 70.4
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 3.5e-74 282.0 186 72.0
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 4.5e-74 281.6 190 69.5
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 4.5e-74 281.6 187 70.6
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 1.0e-73 280.4 190 66.8
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 1.3e-73 280.0 186 71.5
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 1.7e-73 279.6 192 71.4
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 2.3e-73 279.3 187 69.5
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 6.6e-73 277.7 189 70.4
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 1.1e-72 276.9 189 68.3
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 1.5e-72 276.6 187 69.0
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.5e-72 276.6 186 69.4
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 1.5e-72 276.6 186 68.3
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 1.5e-72 276.6 190 69.5
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 1.9e-72 276.2 190 68.4
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 3.3e-72 275.4 189 67.7
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 4.3e-72 275.0 189 68.3
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 1.6e-71 273.1 190 67.9
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 1.6e-71 273.1 190 66.3
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 1.6e-71 273.1 187 68.4
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 2.1e-71 272.7 190 67.4
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 3.6e-71 271.9 205 64.4
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 4.7e-71 271.6 187 69.5
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 6.1e-71 271.2 188 67.6
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 1.0e-70 270.4 189 70.4
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 1.4e-70 270.0 189 69.3
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 2.3e-70 269.2 190 66.8
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 3.1e-70 268.9 195 67.7
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 6.8e-70 267.7 189 70.4
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 2.0e-69 266.2 188 66.5
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 2.0e-69 266.2 188 68.1
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 2.6e-69 265.8 190 65.3
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 3.4e-69 265.4 221 59.7
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 5.8e-69 264.6 186 67.7
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 9.8e-69 263.8 190 67.4
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 1.3e-68 263.5 182 68.1
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 2.9e-68 262.3 187 65.2
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 8.3e-68 260.8 190 66.8
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 1.9e-67 259.6 226 56.6
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 5.4e-67 258.1 188 64.9
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 9.2e-67 257.3 185 63.2
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 2.0e-66 256.1 189 63.0
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 7.8e-66 254.2 192 65.1
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 7.8e-66 254.2 189 66.1
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 1.7e-65 253.1 189 64.0
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 3.9e-65 251.9 190 62.6
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 6.6e-65 251.1 186 62.4
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 8.6e-65 250.8 188 63.3
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.1e-64 250.4 186 62.4
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 4.3e-64 248.4 186 65.6
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 9.5e-64 247.3 183 62.8
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 1.2e-63 246.9 183 63.9
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 3.1e-62 242.3 183 62.3
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 8.9e-62 240.7 187 64.7
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 1.5e-61 240.0 176 67.0
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 9.8e-61 237.3 184 60.9
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.2e-60 236.1 145 73.8
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 4.6e-58 228.4 190 60.5
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 1.0e-57 227.3 184 58.7
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.3e-57 226.9 179 63.7
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 1.3e-57 226.9 144 71.5
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 3.0e-57 225.7 190 60.0
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 5.6e-56 221.5 183 56.3
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 1.2e-55 220.3 186 58.6
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 1.6e-55 219.9 173 64.2
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.4e-54 216.9 189 59.3
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 4.4e-53 211.8 148 69.6
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 3.7e-52 208.8 175 57.1
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 8.3e-52 207.6 187 52.9
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 4.6e-50 201.8 186 54.3
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 3.9e-49 198.7 132 69.7
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 9.0e-38 161.0 82 92.7
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 3.5e-34 149.1 111 61.3
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 5.3e-30 135.2 110 57.3
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 4.9e-28 128.6 83 71.1
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 6.0e-26 121.7 103 58.3
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 3.3e-24 115.9 115 51.3
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 4.9e-20 102.1 94 52.1
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 6.7e-17 91.7 75 60.0


User provided reference genes

Program Settings