Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.3e-304 1049.3 679 100.0
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.3e-299 1032.7 679 98.4
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 3.1e-290 1001.5 679 95.0
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 6.4e-288 993.8 679 93.8
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 8.4e-288 993.4 681 94.3
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.3e-285 986.1 679 93.5
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 9.6e-284 979.9 680 92.8
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 9.6e-284 979.9 680 92.8
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 1.3e-283 979.5 680 92.9
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-283 979.2 680 92.8
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 2.1e-283 978.8 680 92.6
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 1.5e-281 972.6 680 92.2
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 4.3e-276 954.5 680 91.3
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 3.6e-254 881.7 651 87.7
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 9.1e-250 867.1 663 86.0
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 5.9e-249 864.4 663 85.7
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 2.2e-248 862.4 665 85.3
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 3.6e-246 855.1 662 84.6
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 4.8e-235 818.1 663 72.9
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 3.3e-223 778.9 655 77.9
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 9.8e-220 767.3 657 77.3
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 1.3e-216 756.9 658 76.3
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 6.6e-216 754.6 650 76.3
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 8.0e-214 747.7 663 76.5
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 3.1e-213 745.7 651 77.7
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.3e-211 740.3 664 74.8
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 1.7e-211 740.0 650 76.8
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 2.2e-211 739.6 652 73.9
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.9e-210 736.5 650 77.4
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 1.6e-209 733.4 672 74.9
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 8.6e-208 727.6 661 73.1
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 2.5e-207 726.1 667 74.8
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 4.3e-207 725.3 663 73.8
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 5.6e-207 724.9 648 75.6
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 1.8e-205 719.9 650 71.7
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 5.2e-205 718.4 683 70.1
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 5.8e-204 714.9 688 72.4
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 9.9e-204 714.1 672 74.4
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 9.9e-204 714.1 660 74.8
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 6.4e-203 711.4 661 74.7
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 2.1e-201 706.4 662 72.2
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 3.0e-200 702.6 653 71.4
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 4.3e-199 698.7 652 66.0
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 4.7e-198 695.3 617 76.8
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 4.7e-198 695.3 655 70.7
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 6.2e-198 694.9 652 73.0
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 8.1e-198 694.5 557 81.5
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 5.2e-197 691.8 646 72.3
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 2.9e-195 686.0 646 73.2
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 1.1e-194 684.1 651 72.7
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 1.4e-194 683.7 664 70.5
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 2.4e-194 682.9 660 71.8
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 5.4e-194 681.8 657 71.1
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 9.2e-194 681.0 664 71.4
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 1.2e-193 680.6 664 71.4
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.6e-193 680.2 673 66.9
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.7e-193 679.5 655 72.5
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 3.5e-193 679.1 658 72.8
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 6.0e-193 678.3 664 68.5
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 1.3e-192 677.2 645 74.0
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 5.1e-192 675.2 662 71.6
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 5.1e-192 675.2 666 61.3
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 6.6e-192 674.9 655 72.2
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 8.7e-192 674.5 658 71.9
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.1e-191 674.1 657 66.7
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 1.5e-191 673.7 663 71.2
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.5e-191 673.7 663 70.9
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 3.3e-191 672.5 647 73.3
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 3.3e-191 672.5 658 70.7
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 5.6e-191 671.8 644 69.3
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.6e-190 670.2 664 64.3
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 2.1e-190 669.8 656 71.3
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 2.8e-190 669.5 666 69.1
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 4.8e-190 668.7 661 71.7
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 6.2e-190 668.3 655 71.3
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 2.4e-189 666.4 666 68.9
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 3.1e-189 666.0 662 68.6
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 4.0e-189 665.6 661 69.9
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 2.0e-188 663.3 657 72.6
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 4.4e-188 662.1 614 73.9
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 4.4e-188 662.1 652 69.8
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 4.4e-188 662.1 663 70.4
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 5.8e-188 661.8 664 66.1
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 7.6e-188 661.4 567 75.3
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 1.3e-187 660.6 639 71.0
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.7e-187 660.2 673 71.8
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 3.8e-187 659.1 642 72.7
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 4.9e-187 658.7 661 68.1
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 2.4e-186 656.4 660 66.2
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 3.2e-186 656.0 656 65.1
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 5.4e-186 655.2 664 65.8
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 9.3e-186 654.4 687 69.3
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 2.1e-185 653.3 664 67.9
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 7.8e-185 651.4 658 70.2
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 6.6e-184 648.3 654 68.8
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 1.1e-183 647.5 654 70.9
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.5e-183 647.1 674 64.4
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 1.1e-181 641.0 658 70.1
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 2.6e-180 636.3 655 69.9
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 1.7e-179 633.6 701 58.8
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 1.7e-179 633.6 564 67.7
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 1.6e-177 627.1 662 66.8
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 2.1e-177 626.7 656 69.5
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 5.1e-176 622.1 691 65.6
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 3.3e-175 619.4 573 74.2
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 7.1e-170 601.7 597 71.4
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 5.5e-162 575.5 650 60.3
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.5e-159 567.4 660 57.3
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 5.7e-159 565.5 659 62.2
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 2.0e-156 557.0 525 77.9
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 1.4e-154 550.8 599 62.9
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 5.7e-151 538.9 673 55.4
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.6e-145 520.8 650 63.1
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 7.9e-145 518.5 523 73.2
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 2.4e-141 506.9 670 53.0
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.4e-136 491.1 625 54.9
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.8e-133 480.7 707 57.3
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.6e-132 477.6 521 71.6
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 1.3e-131 474.6 508 70.5
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.0e-128 464.9 617 52.4
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 4.4e-127 459.5 492 67.7
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 5.2e-120 436.0 505 59.4
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 2.0e-116 424.1 521 50.7
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.1e-114 418.3 514 57.4
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.1e-113 414.1 239 82.0
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 6.4e-110 402.5 247 79.8
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 9.5e-106 388.7 280 75.0
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 6.4e-102 375.9 285 68.1
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.6e-97 361.3 485 63.7
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 2.0e-95 354.4 297 64.0
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 5.2e-88 329.7 476 54.0
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 1.7e-86 324.7 185 88.6
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 5.4e-85 319.7 247 64.8
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.2e-79 302.0 205 72.2
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.5e-74 285.0 304 84.2
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.1e-72 278.9 302 51.7
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-68 265.0 294 50.0
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 8.7e-67 259.2 139 93.5
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 4.3e-66 256.9 319 72.1
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 9.9e-63 245.7 284 51.1
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 1.8e-56 224.9 164 67.1
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 3.2e-53 214.2 111 94.6
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 7.1e-53 213.0 292 46.6
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 5.1e-51 206.8 111 91.9
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 3.3e-50 204.1 187 55.6
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.7e-46 191.8 216 48.1
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 5.1e-43 180.3 289 76.8
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 2.2e-38 164.9 83 89.2
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 1.9e-37 161.8 167 52.7
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 3.6e-36 157.5 178 51.7
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 1.1e-34 152.5 546 34.4
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 1.3e-33 149.1 147 53.7
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 1.5e-31 142.1 486 45.3
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-29 135.2 322 53.4
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 3.9e-27 127.5 558 31.0
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.9e-27 127.5 102 60.8
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.5e-26 125.6 95 64.2
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.3e-25 122.5 102 60.8
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.7e-25 122.1 111 55.9
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 6.3e-25 120.2 69 85.5
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 1.6e-23 115.5 190 35.8
C01p48850 Brassica napus HOM05D003766 ORTHO05D024562 3.5e-23 114.4 75 81.3
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 4.5e-23 114.0 68 82.4
C07p05440 Brassica napus HOM05D003766 ORTHO05D004607 7.7e-23 113.2 75 81.3
C08p01500 Brassica napus HOM05D003766 ORTHO05D004607 1.3e-22 112.5 75 80.0
A05p35980 Brassica napus HOM05D003766 ORTHO05D024562 1.7e-22 112.1 75 78.7
BraA05t22404Z Brassica rapa HOM05D003766 ORTHO05D024562 1.7e-22 112.1 75 78.7
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 6.5e-22 110.2 64 82.8
A05p18430 Brassica napus HOM05D003766 ORTHO05D024562 1.9e-21 108.6 75 77.3
BraA05t20733Z Brassica rapa HOM05D003766 ORTHO05D024562 1.9e-21 108.6 75 77.3
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 5.5e-21 107.1 72 76.4
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 4.0e-19 100.9 66 74.2
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 4.1e-16 90.9 65 70.8
BolC2t09162H Brassica oleracea HOM05D003766 ORTHO05D004607 2.7e-15 88.2 113 42.5
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 5.9e-15 87.0 59 72.9
A02p18780 Brassica napus HOM05D003766 ORTHO05D004607 1.0e-14 86.3 84 59.5
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 1.0e-14 86.3 49 83.7
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 1.3e-14 85.9 118 43.2
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 5.5e-13 80.5 154 37.0
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 9.4e-13 79.7 60 71.7
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.7e-12 77.4 68 55.9
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 2.3e-11 75.1 45 80.0
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 1.2e-10 72.8 112 36.6
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 1.8e-08 65.5 68 52.9
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 7.0e-08 63.5 54 51.9
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 1.6e-07 62.4 72 43.1


User provided reference genes

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