Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 7.5e-162 573.9 319 100.0
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 1.2e-143 513.5 324 91.7
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 4.6e-135 485.0 327 86.2
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 1.6e-124 449.9 328 82.0
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 2.4e-123 446.0 325 81.8
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 1.5e-117 426.8 326 79.1
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 3.4e-106 389.0 321 74.8
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 3.4e-106 389.0 321 74.8
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 3.4e-106 389.0 321 74.8
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 1.3e-100 370.5 309 75.7
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 1.6e-100 370.2 317 72.9
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 2.2e-97 359.8 310 73.9
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 9.3e-96 354.4 321 68.5
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 3.9e-94 349.0 325 64.6
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 2.6e-74 283.1 282 58.9
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.5e-72 276.6 321 54.5
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 5.5e-72 275.4 321 54.2
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 5.5e-72 275.4 282 57.1
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 7.2e-72 275.0 321 54.2
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 1.2e-71 274.2 277 59.9
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 1.2e-71 274.2 270 63.3
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 2.1e-71 273.5 173 81.5
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 2.1e-71 273.5 313 55.6
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 3.6e-71 272.7 314 54.8
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 7.9e-71 271.6 169 79.9
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 5.1e-70 268.9 174 79.9
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 5.1e-70 268.9 169 79.3
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 2.0e-69 266.9 290 53.8
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.3e-68 264.2 164 80.5
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 8.2e-68 261.5 337 53.1
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 4.1e-67 259.2 278 56.1
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 5.3e-67 258.8 325 52.6
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 1.2e-66 257.7 278 55.8
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 2.6e-66 256.5 328 50.3
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 4.5e-66 255.8 170 77.1
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 5.9e-66 255.4 335 51.0
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 5.9e-66 255.4 317 54.3
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 6.5e-65 251.9 182 70.9
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 6.5e-65 251.9 180 71.7
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 1.1e-64 251.1 176 71.0
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 2.5e-64 250.0 324 53.4
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 4.2e-64 249.2 165 76.4
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 4.2e-64 249.2 317 48.3
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 5.5e-64 248.8 275 57.5
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 9.4e-64 248.1 329 48.0
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.1e-63 246.9 194 68.0
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 3.6e-63 246.1 317 47.3
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 4.7e-63 245.7 206 63.6
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 6.1e-63 245.4 350 46.9
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 8.0e-63 245.0 173 72.8
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 2.3e-62 243.4 355 49.9
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 1.5e-61 240.7 317 53.9
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 1.5e-61 240.7 301 54.2
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 2.0e-61 240.4 176 68.2
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 2.6e-61 240.0 169 68.6
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 3.3e-61 239.6 311 52.1
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 5.7e-61 238.8 328 49.7
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.3e-60 237.7 315 50.8
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 1.7e-60 237.3 177 68.4
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 6.3e-60 235.3 317 50.2
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 1.4e-59 234.2 195 63.6
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 1.4e-59 234.2 315 51.1
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 1.4e-59 234.2 185 65.4
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.4e-59 234.2 185 65.4
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.4e-59 233.4 170 70.0
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 9.1e-59 231.5 327 46.8
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.2e-58 231.1 172 72.1
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 4.5e-58 229.2 356 47.2
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 4.5e-58 229.2 164 73.2
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 4.5e-58 229.2 311 50.5
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 2.9e-57 226.5 171 67.3
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 3.8e-57 226.1 328 46.3
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 5.0e-57 225.7 169 72.8
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 5.0e-57 225.7 180 67.8
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 5.0e-57 225.7 185 67.0
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 1.1e-56 224.6 296 50.0
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.5e-56 224.2 251 52.6
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 1.5e-56 224.2 175 69.1
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 1.9e-56 223.8 320 51.9
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 4.2e-56 222.6 158 72.2
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 4.2e-56 222.6 307 52.8
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 7.2e-56 221.9 167 67.1
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 1.0e-54 218.0 162 72.2
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.0e-54 218.0 315 48.6
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 8.8e-54 214.9 171 70.2
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.5e-53 214.2 180 61.7
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 2.0e-53 213.8 192 60.9
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 3.4e-53 213.0 358 44.7
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 4.4e-53 212.6 165 67.9
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 9.8e-53 211.5 165 67.3
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 9.8e-53 211.5 303 49.8
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 6.3e-52 208.8 127 81.9
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 1.6e-50 204.1 173 63.0
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 7.7e-50 201.8 255 49.0
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.9e-48 197.2 275 47.3
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 1.2e-47 194.5 207 55.1
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 3.0e-46 189.9 153 65.4
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 3.0e-46 189.9 153 65.4
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 1.2e-45 188.0 180 57.2
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 1.4e-43 181.0 161 59.0
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 4.1e-43 179.5 204 51.5
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 2.0e-42 177.2 168 57.7
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 2.5e-40 170.2 274 43.4
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 7.3e-40 168.7 124 69.4
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 8.9e-38 161.8 104 79.8
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 3.5e-34 149.8 124 64.5
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 5.0e-33 146.0 119 66.4
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 9.5e-32 141.7 250 40.0
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 1.6e-26 124.4 180 40.0
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 1.0e-25 121.7 184 38.0
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 9.5e-24 115.2 107 62.6
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 1.8e-22 110.9 64 87.5
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 4.4e-21 106.3 71 77.5
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 8.6e-17 92.0 105 53.3
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 5.6e-16 89.4 147 42.2
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 5.8e-13 79.3 114 42.1
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 1.3e-12 78.2 73 58.9
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.2e-11 73.6 40 85.0
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 5.4e-11 72.8 205 33.7
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.2e-10 71.6 39 84.6
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 2.7e-10 70.5 181 37.6
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 4.6e-10 69.7 44 75.0
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 6.6e-09 65.9 107 43.0
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 3.3e-08 63.5 43 69.8
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 4.3e-08 63.2 44 70.5
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.8e-06 57.8 35 74.3
TPR.G8429 Trifolium pratense HOM05D006300 ORTHO05D007623 3.1e-06 57.0 68 42.6


User provided reference genes

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