Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G28650 Arabidopsis lyrata HOM05D004343 ORTHO05D031323 3.5e-28 127.5 60 100.0
AT1G60490 Arabidopsis thaliana HOM05D004343 ORTHO05D005695 1.2e-20 102.4 58 82.8
AL2G16200 Arabidopsis lyrata HOM05D004343 ORTHO05D005695 1.6e-20 102.1 58 82.8
Carub.0002s0485 Capsella rubella HOM05D004343 ORTHO05D005695 7.8e-20 99.8 58 79.3
BcaC04g22231 Brassica carinata HOM05D004343 ORTHO05D005695 4.3e-18 94.0 58 70.7
BolC9t55085H Brassica oleracea HOM05D004343 ORTHO05D005695 4.3e-18 94.0 58 70.7
Thhalv10023282m.g Eutrema salsugineum HOM05D004343 ORTHO05D005695 9.5e-18 92.8 58 75.9
C09p21800 Brassica napus HOM05D004343 ORTHO05D005695 1.6e-17 92.0 58 69.0
A09p17490 Brassica napus HOM05D004343 ORTHO05D005695 2.8e-17 91.3 58 69.0
BcaB07g31219 Brassica carinata HOM05D004343 ORTHO05D005695 6.2e-17 90.1 58 70.7
BraA09t37375Z Brassica rapa HOM05D004343 ORTHO05D005695 1.4e-16 89.0 58 67.2
Sp2g04240 Schrenkiella parvula HOM05D004343 ORTHO05D005695 1.4e-16 89.0 58 72.4
BcaC06g31812 Brassica carinata HOM05D004343 ORTHO05D005695 8.9e-16 86.3 58 67.2
Aa31LG2G9960 Aethionema arabicum HOM05D004343 ORTHO05D005695 1.2e-15 85.9 58 67.2
BcaC02g10625 Brassica carinata HOM05D004343 ORTHO05D005695 9.8e-15 82.8 58 67.2
THA.LOC104809607 Tarenaya hassleriana HOM05D004343 ORTHO05D005695 9.8e-15 82.8 55 67.3
CsaV3_2G024650 Cucumis sativus L. HOM05D004343 ORTHO05D005695 6.4e-14 80.1 58 62.1
BcaC07g40096 Brassica carinata HOM05D004343 ORTHO05D031323 8.3e-14 79.7 58 63.8
TAR622G0032 Trochodendron aralioides HOM05D004343 ORTHO05D005695 8.3e-14 79.7 55 67.3
Cfa009167 Carpinus fangiana HOM05D004343 ORTHO05D005695 1.1e-13 79.3 58 60.3
Haze_12200 Corylus avellana HOM05D004343 ORTHO05D005695 1.1e-13 79.3 58 60.3
THA.LOC104823649 Tarenaya hassleriana HOM05D004343 ORTHO05D005695 1.1e-13 79.3 58 67.2
TAR371G0394 Trochodendron aralioides HOM05D004343 ORTHO05D005695 1.1e-13 79.3 58 63.8
TWI36G0660 Tripterygium wilfordii HOM05D004343 ORTHO05D005695 1.4e-13 79.0 58 62.1
CANSAT01G0446 Cannabis sativa HOM05D004343 ORTHO05D005695 1.9e-13 78.6 58 62.1
HanXRQChr14g0446801 Helianthus annuus HOM05D004343 ORTHO05D005695 1.9e-13 78.6 60 61.7
Rhsim12G0115800 Rhododendron simsii HOM05D004343 ORTHO05D005695 1.9e-13 78.6 59 61.0
GSVIVG01013767001 Vitis vinifera HOM05D004343 ORTHO05D005695 1.9e-13 78.6 58 60.3
TWI75G1525 Tripterygium wilfordii HOM05D004343 ORTHO05D005695 2.4e-13 78.2 58 60.3
ClCG08G018000 Citrullus lanatus HOM05D004343 ORTHO05D005695 3.2e-13 77.8 58 60.3
Dinv15280 Davidia involucrata HOM05D004343 ORTHO05D005695 5.4e-13 77.0 59 61.0
Sc04g0009240 Simmondsia chinensis HOM05D004343 ORTHO05D005695 7.1e-13 76.6 58 56.9
Manes.12G027200 Manihot esculenta HOM05D004343 ORTHO05D005695 9.2e-13 76.3 58 60.3
Thecc.02G252600 Theobroma cacao HOM05D004343 ORTHO05D005695 9.2e-13 76.3 58 58.6
Duzib251G0882 Durio zibethinus HOM05D004343 ORTHO05D005695 1.2e-12 75.9 58 60.3
vmacro16235 Vaccinium macrocarpon HOM05D004343 ORTHO05D005695 1.2e-12 75.9 59 59.3
Actinidia15052 Actinidia chinensis HOM05D004343 ORTHO05D005695 1.6e-12 75.5 59 59.3
Atru.chr13.1904 Acer truncatum HOM05D004343 ORTHO05D005695 2.7e-12 74.7 58 60.3
Aqoxy3G02910 Aquilegia oxysepala HOM05D004343 ORTHO05D005695 2.7e-12 74.7 58 56.9
Lsat_1_v5_gn_4_161060 Lactuca sativa HOM05D004343 ORTHO05D005695 2.7e-12 74.7 59 57.6
Atru.chr11.2051 Acer truncatum HOM05D004343 ORTHO05D005695 3.5e-12 74.3 58 58.6
Lj6A807T88 Lonicera japonica HOM05D004343 ORTHO05D005695 3.5e-12 74.3 59 59.3
Nn2g14843 Nelumbo nucifera HOM05D004343 ORTHO05D005695 3.5e-12 74.3 58 58.6
Cpa.g.sc69.63 Carica papaya HOM05D004343 ORTHO05D005695 6.0e-12 73.6 58 55.2
Cc11_g15270 Coffea canephora HOM05D004343 ORTHO05D005695 6.0e-12 73.6 55 61.8
Oeu054064.1 Olea europaea HOM05D004343 ORTHO05D005695 7.8e-12 73.2 55 61.8
MD13G1093900 Malus domestica HOM05D004343 ORTHO05D005695 1.0e-11 72.8 60 58.3
Gohir.D01G149200 Gossypium hirsutum HOM05D004343 ORTHO05D005695 1.3e-11 72.4 58 56.9
Gohir.A01G161800 Gossypium hirsutum HOM05D004343 ORTHO05D005695 1.7e-11 72.0 58 56.9
Gorai.002G185300 Gossypium raimondii HOM05D004343 ORTHO05D005695 1.7e-11 72.0 58 56.9
MBI16_g27084_MAGBIO Magnolia biondii HOM05D004343 ORTHO05D005695 1.7e-11 72.0 58 53.4
PGR119G1808 Punica granatum HOM05D004343 ORTHO05D005695 1.7e-11 72.0 58 58.6
Duzib268G1271 Durio zibethinus HOM05D004343 ORTHO05D005695 2.3e-11 71.6 54 59.3
Nitab4.5_0000147g0050 Nicotiana tabacum HOM05D004343 ORTHO05D005695 3.0e-11 71.2 54 66.7
Psat2g104920 Pisum sativum HOM05D004343 ORTHO05D005695 3.0e-11 71.2 55 60.0
Sed0015591 Sechium edule HOM05D004343 ORTHO05D005695 3.0e-11 71.2 60 55.0
TPR.G21086 Trifolium pratense HOM05D004343 ORTHO05D005695 3.0e-11 71.2 55 60.0
MSTRG.6617 Avicennia marina HOM05D004343 ORTHO05D005695 3.9e-11 70.9 55 60.0
CiPaw.06G071000 Carya illinoinensis HOM05D004343 ORTHO05D005695 3.9e-11 70.9 58 55.2
Ciclev10030717m.g Citrus clementina HOM05D004343 ORTHO05D005695 3.9e-11 70.9 63 54.0
Eucgr.H02571 Eucalyptus grandis HOM05D004343 ORTHO05D005695 3.9e-11 70.9 58 56.9
Glyma.06G096300 Glycine max HOM05D004343 ORTHO05D005695 3.9e-11 70.9 58 56.9
MD16G1095200 Malus domestica HOM05D004343 ORTHO05D005695 3.9e-11 70.9 60 58.3
SGA_v2.0_scaffold181G39704 Striga asiatica HOM05D004343 ORTHO05D005695 3.9e-11 70.9 58 55.2
AUR62014058 Chenopodium quinoa HOM05D004343 ORTHO05D005695 5.1e-11 70.5 61 54.1
Nitab4.5_0001663g0240 Nicotiana tabacum HOM05D004343 ORTHO05D005695 6.6e-11 70.1 54 66.7
QL03p059677 Quercus lobata HOM05D004343 ORTHO05D005695 6.6e-11 70.1 58 55.2
Hund25360 Selenicereus undatus HOM05D004343 ORTHO05D005695 6.6e-11 70.1 58 50.0
CDE05G0167 Ceratophyllum demersum HOM05D004343 ORTHO05D005695 1.1e-10 69.3 59 54.2
HanXRQChr17g0539451 Helianthus annuus HOM05D004343 ORTHO05D005695 1.5e-10 68.9 58 56.9
Ca_03146_v3 Cicer arietinum L. HOM05D004343 ORTHO05D005695 1.9e-10 68.6 58 55.2
ECA246G3761 Erigeron canadensis HOM05D004343 ORTHO05D005695 1.9e-10 68.6 61 54.1
Oeu022146.1 Olea europaea HOM05D004343 ORTHO05D005695 1.9e-10 68.6 55 56.4
C04p25930 Brassica napus HOM05D004343 ORTHO05D005695 2.5e-10 68.2 75 50.7
BolC4t24216H Brassica oleracea HOM05D004343 ORTHO05D005695 2.5e-10 68.2 75 49.3
Pp3c10_8910 Physcomitrium patens HOM05D004343 ORTHO05D005695 2.5e-10 68.2 58 55.2
Prupe.1G251400 Prunus persica HOM05D004343 ORTHO05D005695 2.5e-10 68.2 60 55.0
VMungo1215G0144 Vigna mungo HOM05D004343 ORTHO05D005695 3.3e-10 67.8 58 50.0
AUR62005396 Chenopodium quinoa HOM05D004343 ORTHO05D005695 4.3e-10 67.4 61 52.5
Lalb_Chr09g0326321 Lupinus albus HOM05D004343 ORTHO05D005695 4.3e-10 67.4 58 53.4
Medtr5g034120 Medicago truncatula HOM05D004343 ORTHO05D005695 5.6e-10 67.0 55 58.2
EL10Ac6g13693 Beta vulgaris HOM05D004343 ORTHO05D005695 7.3e-10 66.6 61 52.5
FAN12G0317 Fragaria x ananassa HOM05D004343 ORTHO05D005695 7.3e-10 66.6 60 55.0
SalBow8G4047 Salvia bowleyana HOM05D004343 ORTHO05D005695 7.3e-10 66.6 54 57.4
SEGI_07357 Sequoiadendron giganteum HOM05D004343 ORTHO05D005695 7.3e-10 66.6 58 53.4
Ah.03g132780 Amaranthus hybridus HOM05D004343 ORTHO05D005695 9.5e-10 66.2 61 50.8
CAN.G1905.4 Capsicum annuum HOM05D004343 ORTHO05D005695 9.5e-10 66.2 54 59.3
FAN07G1173 Fragaria x ananassa HOM05D004343 ORTHO05D005695 9.5e-10 66.2 60 53.3
FAN17G1932 Fragaria x ananassa HOM05D004343 ORTHO05D005695 9.5e-10 66.2 61 52.5
FAN22G1014 Fragaria x ananassa HOM05D004343 ORTHO05D005695 9.5e-10 66.2 61 52.5
Lj2g0023088 Lotus japonicus HOM05D004343 ORTHO05D005695 9.5e-10 66.2 59 55.9
Peaxi162Scf01286g00001 Petunia axillaris HOM05D004343 ORTHO05D005695 9.5e-10 66.2 60 56.7
arahy.Tifrunner.gnm1.ann1.NH5LZK Arachis hypogaea HOM05D004343 ORTHO05D005695 1.2e-09 65.9 59 54.2
arahy.Tifrunner.gnm1.ann1.V3QVP0 Arachis hypogaea HOM05D004343 ORTHO05D005695 1.2e-09 65.9 59 54.2
PSO675G7676 Papaver somniferum HOM05D004343 ORTHO05D005695 1.2e-09 65.9 61 50.8
Phvul.002G070100 Phaseolus vulgaris HOM05D004343 ORTHO05D005695 1.2e-09 65.9 58 55.2
FvH4_4g34140 Fragaria vesca HOM05D004343 ORTHO05D005695 1.6e-09 65.5 60 53.3
AagrBONN_evm.TU.Sc2ySwM_228.633 Anthoceros agrestis HOM05D004343 ORTHO05D005695 2.1e-09 65.1 58 56.9
Migut.M00070 Erythranthe guttata HOM05D004343 ORTHO05D005695 2.1e-09 65.1 55 52.7
Glyma.04G094500 Glycine max HOM05D004343 ORTHO05D005695 2.8e-09 64.7 60 53.3
RcHm_v2.0_Chr4g0443651 Rosa chinensis HOM05D004343 ORTHO05D005695 2.8e-09 64.7 60 53.3
DCAR_018086 Daucus carota HOM05D004343 ORTHO05D005695 3.6e-09 64.3 59 50.8
Solyc04g015350.3 Solanum lycopersicum HOM05D004343 ORTHO05D005695 4.7e-09 63.9 59 54.2
Sopen04g007420 Solanum pennellii HOM05D004343 ORTHO05D005695 4.7e-09 63.9 59 54.2
Eucgr.B01668 Eucalyptus grandis HOM05D004343 ORTHO05D005695 8.1e-09 63.2 57 50.9
Sabra12G0053500 Salix brachista HOM05D004343 ORTHO05D005695 8.1e-09 63.2 57 57.9
Hma1.2p1_0160F.1_g070980 Hydrangea macrophylla HOM05D004343 ORTHO05D005695 1.1e-08 62.8 57 52.6
Hma1.2p1_0536F.1_g173910 Hydrangea macrophylla HOM05D004343 ORTHO05D005695 1.1e-08 62.8 53 58.5
Lalb_Chr05g0216791 Lupinus albus HOM05D004343 ORTHO05D005695 1.8e-08 62.0 59 50.8
Potri.012G075100 Populus trichocarpa HOM05D004343 ORTHO05D005695 8.9e-08 59.7 60 55.0
AagrBONN_evm.TU.Sc2ySwM_362.587 Anthoceros agrestis HOM05D004343 ORTHO05D005695 7.6e-07 56.6 58 51.7
HPP92_021387 Vanilla planifolia HOM05D004343 ORTHO05D005695 7.6e-07 56.6 58 48.3
SHI17516 Sapria himalayana HOM05D004343 ORTHO05D364912 2.9e-06 54.7 34 70.6
Sabra15G0094700 Salix brachista HOM05D004343 ORTHO05D005695 8.4e-06 53.1 48 52.1


User provided reference genes

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