Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1969.9 990 100.0
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1906.3 990 96.4
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1901.3 990 96.4
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1899.4 990 96.3
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1890.2 990 95.5
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1887.8 990 95.2
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1877.8 992 94.9
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1867.8 1002 93.6
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1858.2 992 94.0
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1847.0 995 93.4
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1838.9 990 93.4
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1835.5 1005 92.2
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1823.5 1005 91.8
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1814.7 1007 91.3
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1779.6 998 89.9
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1778.5 1040 87.9
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1775.4 986 89.0
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1698.3 990 83.9
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1689.9 988 83.9
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1685.6 991 83.4
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1682.9 990 83.3
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1680.2 990 82.7
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1679.1 990 82.7
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1675.6 990 82.7
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1671.8 990 82.7
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1669.8 990 82.6
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1668.3 990 82.5
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1667.9 991 82.5
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1659.8 990 82.4
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1659.8 990 82.5
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1657.9 990 81.7
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1655.6 990 82.0
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1649.4 991 81.4
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1646.3 990 81.7
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1642.1 990 80.9
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1637.5 990 81.2
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1636.3 990 80.9
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1634.8 989 81.4
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1627.8 991 80.4
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1627.8 990 80.3
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1624.0 991 80.8
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1624.0 987 81.3
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1623.6 1018 79.7
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1623.6 1000 80.0
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1623.6 991 80.3
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1622.4 991 80.5
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1622.4 991 80.6
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1620.9 1014 79.2
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1618.2 1014 79.0
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1616.7 989 80.3
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1616.3 990 79.5
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1609.3 990 79.3
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1609.0 1085 74.6
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1605.1 1007 79.4
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1604.7 992 79.1
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1604.0 991 79.9
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1601.6 992 79.3
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1600.1 1014 78.1
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1598.9 990 80.1
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1598.6 990 78.7
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1597.4 848 94.3
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1596.6 999 79.1
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1593.6 995 79.5
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1591.6 990 79.0
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1590.9 992 79.4
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1589.3 989 79.6
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1588.5 1080 74.8
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1588.5 998 78.5
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1584.3 1028 77.2
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1583.2 992 78.2
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1574.3 992 78.8
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1572.4 990 79.3
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1571.6 990 78.3
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1564.7 991 78.3
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1564.7 991 78.3
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1563.9 989 78.4
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1563.1 937 82.0
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1553.5 988 77.7
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1552.7 991 77.5
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1550.8 977 77.9
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1541.6 991 77.5
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1528.5 988 77.1
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1526.1 1025 75.2
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1524.2 942 79.2
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1516.5 990 76.1
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1514.2 1021 74.0
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1495.3 980 74.4
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1489.6 926 80.2
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1465.3 991 74.8
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1437.2 991 73.5
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1432.5 896 78.5
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1414.1 982 70.5
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1358.2 819 82.4
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1342.8 996 68.1
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1339.3 785 83.8
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1329.3 790 83.2
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1310.0 773 83.6
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1300.4 860 75.8
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1299.3 794 80.9
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1293.1 792 80.1
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1283.1 954 68.7
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1265.8 761 82.4
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1247.3 996 66.5
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1241.5 765 80.5
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1185.2 784 77.2
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1170.2 992 60.2
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1154.0 981 59.4
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1115.1 763 74.6
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 2.0e-293 1012.7 977 52.0
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 7.2e-288 994.2 788 62.2
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 5.2e-286 988.0 643 77.6
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.0e-282 976.1 611 79.1
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 8.8e-278 960.7 667 72.0
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 3.1e-275 952.2 555 84.1
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.1e-248 864.0 574 75.4
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 3.0e-241 839.3 519 79.4
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.6e-239 833.6 519 79.6
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 8.1e-239 831.2 611 66.1
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 2.4e-198 696.8 418 80.4
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 4.0e-161 573.2 336 82.4
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.4e-150 536.2 338 76.6
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.8e-141 505.8 282 85.1
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 1.1e-123 448.7 1067 31.5
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 9.6e-115 419.1 249 83.1
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 3.1e-105 387.5 207 91.3
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 3.4e-104 384.0 1016 29.0
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 1.3e-100 372.1 1266 27.3
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 6.7e-100 369.8 230 76.1
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 2.5e-99 367.9 268 72.0
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 5.8e-96 356.7 231 72.7
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 2.0e-88 331.6 204 77.0
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 1.5e-83 315.5 231 66.2
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 7.9e-77 293.1 178 78.1
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 3.9e-76 290.8 292 53.8
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 9.7e-75 286.2 200 70.0
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 1.2e-72 279.3 441 39.9
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 6.9e-65 253.4 153 77.8
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.5e-64 252.3 207 61.4
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 4.0e-52 211.1 153 66.0
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 5.2e-52 210.7 127 76.4
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 4.0e-44 184.5 135 60.7
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 6.3e-42 177.2 163 60.7
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.2e-38 163.7 174 56.9
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 2.8e-37 161.8 122 62.3
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.2e-35 156.4 111 69.4
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.4e-35 154.8 99 74.7
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.4e-33 149.4 94 76.6
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 3.5e-32 144.8 88 75.0
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.1e-29 135.6 73 91.8
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 5.2e-28 131.0 131 60.3
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 8.9e-28 130.2 127 60.6
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 6.4e-26 124.0 75 78.7
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 9.2e-25 120.2 99 59.6
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.0e-23 116.7 81 66.7
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.3e-23 115.5 110 56.4
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.3e-23 115.5 110 56.4
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 3.3e-22 111.7 75 73.3
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.8e-21 108.6 80 76.2
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 8.3e-18 97.1 52 88.5
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.0e-15 87.8 102 43.1
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 2.5e-14 85.5 89 47.2
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 4.3e-14 84.7 54 72.2
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 6.2e-13 80.9 100 46.0
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 1.8e-12 79.3 231 24.2
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 2.0e-11 75.9 160 33.8
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.9e-09 69.3 42 66.7
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 1.9e-06 59.3 61 50.8


User provided reference genes

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