Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 1.1e-108 397.1 281 100.0
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 4.1e-103 378.6 281 96.4
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 1.7e-101 373.2 281 94.7
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 9.7e-97 357.5 281 91.8
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 5.9e-94 348.2 281 91.1
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 6.7e-90 334.7 289 76.1
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 1.3e-88 330.5 281 87.9
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 1.7e-88 330.1 281 87.9
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 1.7e-88 330.1 281 87.9
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 2.2e-88 329.7 281 87.5
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 4.8e-88 328.6 281 87.9
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 1.4e-87 327.0 281 87.5
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 5.5e-76 288.5 287 77.7
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 1.8e-63 246.9 284 70.4
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.2e-62 244.2 281 74.0
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 1.3e-61 240.7 281 73.0
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 2.3e-61 240.0 281 73.3
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 2.9e-61 239.6 281 73.0
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 5.0e-61 238.8 281 70.8
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 6.6e-61 238.4 281 71.5
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 1.5e-60 237.3 281 70.8
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 2.5e-60 236.5 281 71.5
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 5.6e-60 235.3 286 72.7
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 5.6e-60 235.3 282 69.9
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 7.3e-60 235.0 281 70.8
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 1.2e-59 234.2 282 71.6
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 1.2e-59 234.2 282 72.0
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 1.6e-59 233.8 281 71.5
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 1.6e-59 233.8 282 69.5
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 6.1e-59 231.9 281 71.9
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 5.2e-58 228.8 290 69.3
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 2.6e-57 226.5 289 67.5
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 2.6e-57 226.5 220 82.7
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 3.4e-57 226.1 283 70.7
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 4.4e-57 225.7 293 64.2
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 5.7e-57 225.3 215 85.1
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 5.7e-57 225.3 215 85.1
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 7.5e-57 224.9 296 67.9
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 7.5e-57 224.9 257 59.1
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 9.8e-57 224.6 286 69.2
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 1.3e-56 224.2 284 69.0
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 1.3e-56 224.2 286 71.3
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 1.3e-56 224.2 288 62.5
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 1.3e-56 224.2 283 68.2
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 1.3e-56 224.2 291 69.8
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.7e-56 223.8 282 67.4
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 1.7e-56 223.8 223 82.1
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 2.2e-56 223.4 281 70.8
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 2.9e-56 223.0 281 70.1
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 1.1e-55 221.1 283 68.9
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 1.1e-55 221.1 282 69.5
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 4.1e-55 219.2 284 70.1
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 4.1e-55 219.2 269 72.5
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 5.4e-55 218.8 250 65.6
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 7.0e-55 218.4 289 69.9
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 7.0e-55 218.4 286 70.6
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 1.2e-54 217.6 283 68.9
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 1.6e-54 217.2 282 69.1
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 2.7e-54 216.5 261 63.2
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 2.7e-54 216.5 280 68.6
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 6.0e-54 215.3 226 81.0
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 7.8e-54 214.9 285 69.8
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 7.8e-54 214.9 281 68.0
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.0e-53 214.5 297 68.4
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.0e-53 214.5 297 68.4
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 1.3e-53 214.2 322 43.5
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 3.9e-53 212.6 282 69.5
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 5.0e-53 212.2 292 68.8
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 3.3e-52 209.5 282 58.2
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 3.3e-52 209.5 309 66.0
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 3.3e-52 209.5 279 65.6
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 7.3e-52 208.4 294 65.3
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 8.0e-51 204.9 194 86.1
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 1.1e-50 204.5 281 67.3
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 1.1e-50 204.5 281 55.2
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 1.1e-50 204.5 284 65.8
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 2.3e-50 203.4 283 67.5
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 3.1e-50 203.0 246 73.6
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 5.2e-50 202.2 278 68.3
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 6.8e-50 201.8 280 49.3
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 1.2e-49 201.1 235 64.7
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 1.5e-49 200.7 194 82.0
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 7.5e-49 198.4 193 75.6
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 6.4e-48 195.3 369 41.7
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 2.4e-47 193.4 217 65.4
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 3.9e-45 186.0 182 81.3
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 7.3e-44 181.8 217 64.1
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 1.1e-42 177.9 265 62.6
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 1.2e-41 174.5 85 97.6
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 5.4e-39 165.6 246 48.0
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 8.6e-37 158.3 87 86.2
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.1e-36 157.9 85 87.1
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 5.6e-36 155.6 85 84.7
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 5.6e-36 155.6 85 84.7
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 2.8e-35 153.3 87 83.9
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 2.4e-34 150.2 87 81.6
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 2.4e-34 150.2 87 81.6
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 3.9e-29 132.9 250 40.4
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 1.1e-26 124.8 178 66.9
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 7.6e-25 118.6 185 48.6
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.4e-23 114.4 217 66.8
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 6.2e-19 99.0 131 46.6
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 1.2e-17 94.7 143 53.8
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 9.9e-17 91.7 131 45.8
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 2.2e-16 90.5 186 48.9
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 6.4e-16 89.0 68 64.7
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 1.1e-15 88.2 131 45.8
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 3.5e-14 83.2 121 45.5
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 1.1e-10 71.6 43 76.7
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 2.4e-10 70.5 43 72.1
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 5.3e-10 69.3 70 52.9
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 1.7e-08 64.3 87 49.4
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 1.4e-07 61.2 40 70.0
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 2.4e-07 60.5 51 56.9


User provided reference genes

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