Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 2017.3 950 100.0
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1922.1 950 95.2
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1883.6 950 92.7
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1862.4 950 91.9
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1862.0 950 91.7
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1818.1 950 90.4
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1810.8 951 89.2
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1810.8 952 89.4
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1810.8 952 89.4
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1786.9 952 88.7
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1781.1 957 87.3
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1766.1 952 87.6
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1763.8 952 87.4
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1760.7 952 87.5
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1755.3 952 87.3
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1684.8 952 85.2
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1665.6 949 83.9
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1656.3 949 83.7
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1644.8 964 81.3
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1597.4 819 90.8
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1509.6 991 72.3
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1502.6 984 72.2
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1497.6 983 72.0
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1496.9 978 72.2
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1496.9 979 72.7
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1492.2 984 71.4
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1492.2 978 72.0
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1492.2 962 72.9
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1490.7 979 72.6
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1489.2 983 70.8
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1488.4 984 70.9
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1488.0 978 71.6
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1487.2 976 72.6
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1486.9 984 71.0
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1486.9 977 72.1
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1484.9 983 71.7
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1483.8 972 71.8
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1480.7 964 72.5
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1479.5 979 71.5
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1478.8 987 71.1
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1476.5 983 70.8
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1474.1 983 70.6
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1473.8 972 72.3
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1472.6 964 71.6
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1471.4 986 69.9
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1470.7 971 71.2
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1467.6 979 70.7
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1466.8 973 71.1
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1466.1 983 70.5
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1466.1 971 71.3
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1463.7 976 69.9
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1460.7 985 70.6
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1460.3 971 70.8
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1458.7 969 70.6
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1456.8 986 69.6
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1456.0 962 70.5
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1455.3 979 70.7
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1454.9 979 70.3
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1453.7 967 71.0
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1451.8 974 70.6
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1451.0 974 69.8
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1449.5 978 70.0
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1448.7 982 69.2
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1448.7 973 69.8
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1448.7 968 71.1
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1448.3 954 71.5
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1447.6 979 69.9
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1447.6 969 71.3
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1447.6 968 70.1
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1447.2 957 70.7
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1446.8 977 69.8
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1446.8 985 68.8
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1446.4 953 70.9
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1443.7 964 70.0
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1443.7 980 70.3
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1442.6 957 71.2
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1442.6 965 71.1
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1442.2 972 70.0
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1441.0 974 69.1
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1439.9 983 68.7
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1439.5 963 71.1
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1437.2 974 70.0
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1436.4 985 69.4
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1436.4 972 69.4
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1434.9 972 68.6
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1434.9 979 68.9
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1434.5 982 68.4
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1434.5 985 69.0
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1434.5 975 69.2
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1434.5 963 70.7
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1434.1 967 69.4
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1431.4 979 69.4
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1429.8 979 68.7
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1429.5 964 69.6
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1429.1 975 69.7
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1427.2 977 68.8
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1424.1 978 68.5
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1423.7 974 69.2
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1422.5 980 69.9
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1419.4 978 68.9
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1419.1 984 68.1
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1418.3 975 68.9
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1412.9 957 69.5
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1410.6 980 68.4
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1409.8 920 71.2
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1402.5 964 70.0
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1397.9 972 69.0
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1392.5 923 70.3
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1383.2 974 67.9
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1379.0 981 66.7
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1374.0 982 66.7
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1358.2 983 66.5
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1356.3 951 66.8
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1356.3 995 65.4
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1351.3 969 67.2
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1341.6 868 71.8
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1335.5 1002 65.8
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1329.3 876 70.8
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1306.2 846 72.3
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1306.2 845 71.7
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1305.4 971 63.7
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1303.1 1010 62.9
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1285.0 767 76.0
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1171.0 779 70.2
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1160.6 765 71.5
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1155.6 762 70.7
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1140.2 784 67.9
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 2.6e-303 1045.4 955 54.5
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 9.3e-301 1036.9 938 55.3
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 7.6e-295 1017.3 672 70.5
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.5e-293 1012.3 941 53.9
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 2.0e-274 949.5 944 50.8
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 4.3e-274 948.3 957 50.2
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 2.3e-267 926.0 679 65.4
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 4.5e-239 832.0 861 50.9
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 9.2e-224 781.2 559 67.1
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 8.7e-190 668.3 408 75.0
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 4.7e-127 459.9 294 74.1
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.8e-110 404.8 343 58.6
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 4.0e-94 350.5 409 46.5
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.3e-92 345.5 221 75.1
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 5.4e-91 340.1 365 51.0
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 4.7e-87 327.0 202 69.8
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 5.6e-80 303.5 198 75.8
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 1.4e-78 298.9 275 56.0
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.8e-71 274.6 161 77.6
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 2.1e-66 258.5 653 29.9
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.6e-66 257.3 159 73.0
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 8.7e-65 253.1 219 57.5
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.0e-60 239.6 142 77.5
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.1e-48 199.5 360 37.5
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 6.9e-46 190.3 850 23.9
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 1.8e-38 165.6 95 77.9
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 5.0e-36 157.5 148 56.8
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 1.4e-33 149.4 143 50.3
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 9.7e-32 143.3 91 67.0
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.4e-30 139.4 98 73.5
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 4.0e-25 121.3 86 66.3
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 4.0e-25 121.3 185 38.4
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 5.9e-21 107.5 104 51.9
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 7.7e-21 107.1 161 39.1
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 1.3e-20 106.3 181 34.8
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 3.2e-19 101.7 111 55.0
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 3.2e-19 101.7 121 44.6
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 7.2e-19 100.5 310 27.7
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.8e-14 85.9 113 46.9
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.5e-11 76.3 57 57.9
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 1.0e-09 70.1 48 70.8
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 2.3e-09 68.9 69 46.4
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 9.8e-08 63.5 73 47.9
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 2.2e-07 62.4 29 86.2
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 4.9e-07 61.2 73 49.3


User provided reference genes

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