Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.3e-61 240.0 157 100.0
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 5.0e-58 228.0 127 96.1
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 1.9e-57 226.1 127 94.5
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.1e-56 222.6 127 93.7
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 4.6e-56 221.5 127 93.7
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 5.1e-55 218.0 155 91.6
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.1e-54 216.9 154 93.5
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 1.9e-54 216.1 153 86.9
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 2.5e-54 215.7 125 92.0
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 2.5e-54 215.7 125 92.0
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 2.5e-54 215.7 125 92.0
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 3.3e-54 215.3 125 92.8
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 5.7e-54 214.5 125 91.2
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 7.4e-54 214.2 125 91.2
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 1.8e-52 209.5 164 87.2
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 2.4e-52 209.1 127 89.0
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 1.6e-48 196.4 152 84.2
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 1.0e-47 193.7 152 83.6
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 2.0e-46 189.5 120 80.0
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 2.0e-46 189.5 127 77.2
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.6e-46 189.1 123 77.2
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 3.3e-46 188.7 122 80.3
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 7.4e-46 187.6 122 77.9
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 7.4e-46 187.6 152 81.6
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 1.3e-45 186.8 123 76.4
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.3e-45 186.8 120 77.5
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 1.3e-45 186.8 120 78.3
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 1.3e-45 186.8 122 78.7
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 1.7e-45 186.4 122 77.9
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 2.2e-45 186.0 122 77.0
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 2.8e-45 185.7 118 78.8
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 3.7e-45 185.3 121 76.9
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 3.7e-45 185.3 121 76.9
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 3.7e-45 185.3 122 77.9
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 3.7e-45 185.3 122 77.9
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 3.7e-45 185.3 120 76.7
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 6.3e-45 184.5 120 77.5
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 8.2e-45 184.1 123 76.4
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 8.2e-45 184.1 120 77.5
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 8.2e-45 184.1 121 77.7
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 8.2e-45 184.1 121 77.7
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 1.1e-44 183.7 120 77.5
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.1e-44 183.7 118 78.0
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.1e-44 183.7 122 76.2
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.4e-44 183.3 122 77.0
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 1.4e-44 183.3 120 77.5
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 3.1e-44 182.2 123 74.0
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 3.1e-44 182.2 124 75.8
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 3.1e-44 182.2 122 75.4
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 3.1e-44 182.2 124 74.2
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 4.1e-44 181.8 135 71.9
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 4.1e-44 181.8 123 74.0
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.1e-44 181.8 122 76.2
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.1e-44 181.8 122 76.2
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 5.3e-44 181.4 123 74.8
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 6.9e-44 181.0 123 75.6
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 6.9e-44 181.0 123 73.2
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 9.1e-44 180.6 120 76.7
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 9.1e-44 180.6 123 74.0
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 9.1e-44 180.6 123 74.0
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 9.1e-44 180.6 124 75.0
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 1.2e-43 180.3 125 72.8
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 1.2e-43 180.3 122 76.2
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.5e-43 179.9 123 74.8
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.5e-43 179.9 152 76.3
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 2.0e-43 179.5 122 75.4
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 2.0e-43 179.5 124 73.4
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 3.4e-43 178.7 124 72.6
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 3.4e-43 178.7 122 74.6
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 3.4e-43 178.7 122 74.6
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 4.5e-43 178.3 122 74.6
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 5.9e-43 177.9 123 74.8
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 7.7e-43 177.6 120 76.7
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 1.0e-42 177.2 120 74.2
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 2.2e-42 176.0 125 73.6
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 2.9e-42 175.6 122 74.6
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 2.9e-42 175.6 122 75.4
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 3.8e-42 175.3 125 72.0
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 3.8e-42 175.3 122 73.8
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 5.0e-42 174.9 123 74.0
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 8.5e-42 174.1 124 71.0
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 1.4e-41 173.3 121 70.2
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 1.9e-41 172.9 121 74.4
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 2.5e-41 172.6 120 72.5
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 2.5e-41 172.6 123 72.4
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 5.5e-41 171.4 120 73.3
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 5.5e-41 171.4 120 73.3
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 5.5e-41 171.4 125 72.8
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 5.5e-41 171.4 124 71.0
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.2e-40 170.2 121 73.6
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 1.6e-40 169.9 122 70.5
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.1e-40 169.5 121 70.2
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 2.1e-40 169.5 120 72.5
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 2.7e-40 169.1 120 71.7
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 4.7e-40 168.3 122 71.3
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 7.9e-40 167.5 120 70.0
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 1.0e-39 167.2 121 69.4
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.0e-39 167.2 121 69.4
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 1.4e-39 166.8 123 70.7
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 1.8e-39 166.4 121 70.2
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 1.8e-39 166.4 123 69.9
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 1.8e-39 166.4 123 67.5
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.3e-39 166.0 121 68.6
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 3.0e-39 165.6 123 70.7
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.5e-38 163.3 125 69.6
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 1.5e-38 163.3 119 68.9
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 7.4e-38 161.0 123 67.5
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 2.8e-37 159.1 121 69.4
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 4.8e-37 158.3 123 61.8
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 2.4e-36 156.0 123 65.0
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.5e-35 152.1 124 59.7
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 4.5e-35 151.8 122 69.7
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 4.5e-35 151.8 101 76.2
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 7.7e-35 151.0 202 47.0
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 3.8e-34 148.7 120 63.3
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 5.0e-34 148.3 193 48.2
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.9e-33 146.4 103 72.8
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 3.2e-33 145.6 122 59.8
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 1.6e-32 143.3 122 61.5
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 2.1e-32 142.9 98 74.5
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.7e-32 142.5 96 75.0
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 4.7e-32 141.7 96 75.0
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 6.1e-32 141.4 92 78.3
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 2.0e-30 136.3 124 55.6
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.6e-27 126.7 120 54.2
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.7e-27 125.9 122 51.6
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 3.5e-27 125.6 127 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 7.7e-27 124.4 120 51.7
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 8.5e-26 120.9 83 74.7
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 8.5e-26 120.9 126 49.2
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 2.0e-22 109.8 81 70.4
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 9.8e-22 107.5 102 58.8
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 1.6e-19 100.1 94 55.3
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 1.6e-19 100.1 94 55.3
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 1.5e-17 93.6 66 68.2
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.5e-17 91.7 96 55.2
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 1.2e-11 73.9 53 60.4
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 8.6e-10 67.8 70 57.1
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 1.5e-09 67.0 70 57.1
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 1.5e-09 67.0 70 57.1
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 6.1e-08 61.6 48 58.3


User provided reference genes

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