Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 6.7e-108 394.0 201 100.0
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 1.1e-97 360.1 201 89.6
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 9.7e-91 337.0 201 83.1
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.0e-83 312.8 201 76.1
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 9.4e-78 293.9 198 74.2
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.6e-77 292.0 201 72.6
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 6.1e-77 291.2 201 72.6
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 8.0e-77 290.8 198 73.2
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.4e-76 290.0 202 72.3
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 1.8e-76 289.7 202 72.3
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.9e-71 272.3 201 68.2
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 7.2e-70 267.7 194 69.6
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.4e-68 263.5 171 75.4
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.3e-63 246.1 197 65.0
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 2.2e-58 229.6 201 59.2
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 1.9e-54 216.5 187 55.6
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 1.9e-54 216.5 195 53.3
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 8.0e-53 211.1 195 52.3
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 4.0e-52 208.8 195 52.3
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 4.0e-52 208.8 192 54.7
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.2e-51 207.2 195 52.8
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.0e-51 206.5 191 52.9
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 2.6e-51 206.1 189 53.4
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 4.4e-51 205.3 192 53.6
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 7.5e-51 204.5 196 51.5
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 9.8e-51 204.1 194 50.0
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.3e-50 203.8 192 53.1
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.3e-50 203.8 195 51.8
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.2e-50 203.0 191 51.8
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.9e-50 202.6 195 50.8
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 2.9e-50 202.6 197 51.3
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 2.9e-50 202.6 196 51.0
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 3.7e-50 202.2 193 51.3
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 4.9e-50 201.8 187 52.4
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 6.4e-50 201.4 195 50.3
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.4e-50 201.4 191 52.4
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 6.4e-50 201.4 193 50.8
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 8.3e-50 201.1 190 50.0
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.1e-49 200.7 195 51.8
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.1e-49 200.7 195 49.2
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.4e-49 200.3 194 49.5
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.9e-49 199.9 189 52.4
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 4.1e-49 198.7 186 52.7
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 5.4e-49 198.4 190 53.2
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 5.4e-49 198.4 190 50.0
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 7.0e-49 198.0 194 50.0
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 9.2e-49 197.6 191 54.5
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 9.2e-49 197.6 189 49.7
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.2e-48 197.2 194 48.5
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 1.2e-48 197.2 190 49.5
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 1.6e-48 196.8 194 49.0
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.6e-48 196.8 195 49.7
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 3.5e-48 195.7 184 50.5
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.5e-48 195.7 189 49.7
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 6.0e-48 194.9 192 51.0
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.3e-47 193.7 195 48.7
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.3e-47 193.7 194 51.0
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.3e-47 193.7 192 48.4
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.7e-47 193.4 191 52.4
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 2.3e-47 193.0 194 46.4
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 3.0e-47 192.6 195 49.2
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 5.0e-47 191.8 194 49.0
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 5.0e-47 191.8 189 48.1
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 8.6e-47 191.0 192 48.4
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.9e-46 189.9 194 48.5
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.9e-46 189.9 192 49.0
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.9e-46 189.9 194 47.9
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 2.5e-46 189.5 195 49.2
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.5e-46 189.5 195 48.2
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 3.3e-46 189.1 187 49.7
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 5.6e-46 188.3 189 47.1
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 7.3e-46 188.0 194 49.5
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 7.3e-46 188.0 187 49.7
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 7.3e-46 188.0 197 48.7
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 9.5e-46 187.6 194 48.5
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 9.5e-46 187.6 183 49.2
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 9.5e-46 187.6 186 49.5
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.2e-45 187.2 189 47.1
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.2e-45 187.2 195 51.8
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.6e-45 186.8 187 49.2
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.1e-45 186.4 195 49.2
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 2.1e-45 186.4 193 49.2
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.6e-45 185.7 192 47.9
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.2e-45 184.9 192 47.4
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.1e-44 184.1 194 49.5
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.8e-44 183.3 195 46.2
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 5.2e-44 181.8 186 47.3
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.8e-44 181.4 186 49.5
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 8.9e-44 181.0 189 47.6
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.2e-43 180.6 186 48.4
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.2e-43 180.6 195 48.7
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 1.5e-43 180.3 193 47.2
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.0e-43 179.9 191 48.2
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.6e-43 179.5 184 48.9
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 4.4e-43 178.7 192 47.9
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 4.4e-43 178.7 194 44.8
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 5.8e-43 178.3 195 47.2
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 5.8e-43 178.3 184 48.4
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 7.5e-43 177.9 190 47.4
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 7.5e-43 177.9 184 48.4
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.3e-42 177.2 197 48.2
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.3e-42 177.2 242 40.5
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.2e-42 176.4 181 49.7
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.7e-42 175.6 189 46.0
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 8.3e-42 174.5 196 47.4
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.1e-41 174.1 187 44.4
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 2.4e-41 172.9 186 46.8
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.4e-41 172.9 187 46.5
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.2e-41 172.6 187 45.5
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 3.2e-41 172.6 186 47.3
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.2e-41 172.6 194 46.4
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 4.1e-41 172.2 186 47.3
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 9.2e-41 171.0 194 47.4
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.2e-40 170.6 180 47.2
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.2e-40 170.6 190 45.8
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.1e-40 169.9 194 44.8
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 2.7e-40 169.5 188 46.8
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 3.5e-40 169.1 190 45.8
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 6.0e-40 168.3 187 43.9
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 7.8e-40 167.9 191 46.6
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 7.8e-40 167.9 144 56.2
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-39 167.2 186 46.2
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 2.3e-39 166.4 194 42.3
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.0e-39 166.0 187 46.0
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 3.9e-39 165.6 186 46.8
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.1e-39 165.2 187 44.9
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 6.6e-39 164.9 186 45.7
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 6.6e-39 164.9 170 47.6
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.9e-38 163.3 149 53.0
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.9e-38 163.3 191 42.4
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 2.5e-38 162.9 187 44.4
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.3e-38 162.5 187 42.8
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 4.3e-38 162.2 186 45.2
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-37 160.2 187 44.4
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.8e-37 159.5 189 43.9
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 6.2e-37 158.3 187 43.3
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 6.2e-37 158.3 186 45.2
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 1.8e-36 156.8 187 44.9
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 6.8e-36 154.8 194 43.3
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.2e-35 154.1 142 53.5
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 3.4e-35 152.5 186 43.5
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 5.8e-35 151.8 177 43.5
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.7e-34 150.2 189 41.3
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 2.2e-34 149.8 163 48.5
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.4e-33 146.4 172 43.0
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.7e-32 142.9 188 37.8
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 3.5e-32 142.5 193 43.0
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.5e-32 142.5 159 45.9
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 7.8e-32 141.4 198 37.4
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.7e-31 140.2 173 45.1
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 6.6e-31 138.3 126 54.0
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.6e-31 138.3 128 51.6
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 4.7e-29 132.1 146 43.8
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.2e-29 131.7 197 38.1
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.4e-28 129.8 154 42.9
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 6.8e-28 128.3 159 46.5
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.3e-26 124.0 123 47.2
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.2e-26 123.2 194 38.1
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 2.2e-26 123.2 198 34.3
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 2.9e-26 122.9 198 34.3
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 3.8e-26 122.5 186 40.9
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.8e-24 114.8 155 42.6
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 2.5e-22 109.8 107 47.7
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.1e-16 90.1 189 29.6
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 8.7e-15 84.7 209 29.2
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.8e-12 77.0 102 43.1
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.4e-12 76.6 192 28.1
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.2e-11 74.3 192 30.7
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 4.5e-11 72.4 105 40.0
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 9.9e-11 71.2 205 27.8
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.9e-10 69.7 163 29.4
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 6.4e-10 68.6 86 44.2
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 8.4e-10 68.2 71 45.1
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.7e-08 63.2 78 37.2


User provided reference genes

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