Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.7e-151 538.9 293 100.0
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 6.5e-145 517.7 293 95.9
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.5e-136 490.0 293 90.8
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 3.3e-133 478.8 294 89.5
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.2e-114 417.2 288 80.6
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 2.0e-109 399.8 294 78.6
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 5.0e-105 385.2 275 77.5
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 4.3e-104 382.1 289 75.1
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 4.3e-104 382.1 294 75.5
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 7.3e-104 381.3 294 75.5
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 3.4e-101 372.5 295 72.5
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.7e-100 370.2 282 73.8
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 4.1e-99 365.5 302 70.2
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 5.4e-99 365.2 299 69.9
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 6.0e-98 361.7 304 69.4
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 3.0e-97 359.4 307 68.4
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 1.1e-96 357.5 296 69.3
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 2.1e-95 353.2 309 66.7
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 2.8e-95 352.8 311 66.9
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 8.9e-94 347.8 304 67.4
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.2e-93 347.4 291 69.4
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 2.0e-93 346.7 304 69.1
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 2.0e-93 346.7 301 66.8
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 2.0e-93 346.7 296 67.9
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 9.9e-93 344.4 290 69.0
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 1.3e-92 344.0 309 66.3
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 6.4e-92 341.7 306 65.0
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 1.4e-91 340.5 307 64.2
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.4e-91 340.5 298 66.1
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.4e-91 339.7 300 67.3
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 3.2e-91 339.3 310 64.8
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.2e-91 339.3 300 67.3
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 3.2e-91 339.3 300 66.0
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 4.1e-91 339.0 303 67.0
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 5.4e-91 338.6 304 66.1
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 9.2e-91 337.8 309 64.7
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 1.2e-90 337.4 291 68.4
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 1.7e-89 333.6 305 64.6
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 3.0e-89 332.8 298 64.4
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 1.1e-88 330.9 304 64.8
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 2.5e-88 329.7 294 68.0
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 3.3e-88 329.3 271 68.6
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 7.3e-88 328.2 293 66.2
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 7.3e-88 328.2 291 68.4
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 2.8e-87 326.2 303 66.0
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 1.4e-86 323.9 285 68.8
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 3.1e-86 322.8 294 65.6
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 3.1e-86 322.8 295 63.1
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 4.0e-86 322.4 291 66.0
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.2e-86 322.0 295 66.1
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 2.6e-85 319.7 295 67.1
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.4e-85 319.3 305 63.3
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 3.4e-85 319.3 257 69.3
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 5.8e-85 318.5 295 66.8
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 1.3e-84 317.4 301 62.8
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.3e-84 317.4 295 63.1
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 4.9e-84 315.5 309 63.4
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 8.4e-84 314.7 306 62.7
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 2.4e-83 313.2 340 57.6
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 7.1e-83 311.6 294 65.0
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 7.1e-83 311.6 294 65.0
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 6.0e-82 308.5 303 62.4
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 7.8e-82 308.1 278 65.8
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.7e-81 307.0 300 62.3
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 1.7e-81 307.0 328 58.5
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 1.7e-81 307.0 304 61.5
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 6.6e-81 305.1 282 63.1
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 5.6e-80 302.0 199 83.9
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 1.6e-79 300.4 291 60.8
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 2.8e-79 299.7 310 60.3
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 4.7e-79 298.9 290 62.4
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 1.4e-78 297.4 298 60.1
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 2.4e-78 296.6 291 61.5
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 5.2e-78 295.4 291 61.5
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 3.4e-77 292.7 290 60.0
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 4.4e-77 292.4 263 62.4
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.3e-76 290.8 294 59.9
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 8.4e-76 288.1 295 59.3
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 8.4e-76 288.1 288 61.1
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 4.2e-75 285.8 308 59.4
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 4.2e-75 285.8 275 60.0
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 4.2e-75 285.8 302 60.6
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 5.4e-75 285.4 310 56.1
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.6e-74 283.9 242 68.6
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 2.1e-74 283.5 313 58.5
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 4.6e-74 282.3 293 59.0
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.3e-73 280.8 294 61.2
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 1.7e-73 280.4 294 58.8
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 8.7e-73 278.1 206 76.2
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 8.7e-73 278.1 206 76.2
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 1.3e-71 274.2 293 59.0
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 2.1e-71 273.5 257 62.6
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.1e-71 273.5 271 60.5
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.1e-71 273.5 271 60.5
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.3e-70 268.9 222 68.9
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 6.4e-68 261.9 271 58.7
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 2.4e-67 260.0 295 56.6
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 4.6e-66 255.8 238 63.9
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 1.6e-63 247.3 200 70.0
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 2.1e-63 246.9 277 55.6
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.1e-62 244.6 310 54.5
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.8e-62 243.8 294 52.0
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 6.9e-62 241.9 200 68.5
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 1.5e-61 240.7 304 51.6
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 9.9e-61 238.0 231 62.3
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.3e-60 237.7 296 56.1
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 2.9e-60 236.5 304 52.6
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 6.4e-60 235.3 304 52.3
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 1.9e-59 233.8 279 54.1
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 2.4e-59 233.4 191 70.2
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.0e-57 228.0 162 75.9
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 2.3e-57 226.9 244 55.7
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 1.3e-55 221.1 317 49.8
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 2.1e-55 220.3 319 48.3
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 2.1e-55 220.3 296 49.7
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.4e-54 217.6 313 48.9
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.5e-53 214.2 294 48.0
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.0e-53 213.8 255 52.5
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 3.4e-53 213.0 203 60.6
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 4.5e-53 212.6 331 44.7
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 1.7e-52 210.7 222 59.0
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 3.2e-51 206.5 149 74.5
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 9.3e-51 204.9 239 55.2
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 1.0e-49 201.4 146 78.8
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 5.1e-49 199.1 245 51.0
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.5e-45 187.6 292 45.2
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 1.0e-44 184.9 270 47.4
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 3.2e-43 179.9 303 44.2
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 9.4e-43 178.3 253 47.8
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 1.0e-41 174.9 293 43.7
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 1.5e-37 161.0 129 74.4
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 3.2e-35 153.3 156 60.9
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 3.6e-34 149.8 151 58.9
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 1.4e-33 147.9 294 40.1
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.4e-25 121.3 95 71.6
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 4.8e-23 112.8 136 47.8
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.0e-20 105.1 160 43.8
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 7.5e-16 89.0 88 55.7
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 8.0e-10 68.9 210 29.0
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 2.6e-08 63.9 59 61.0
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 2.6e-08 63.9 58 65.5
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 1.3e-07 61.6 172 31.4


User provided reference genes

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