Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 5.7e-155 550.8 270 100.0
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 8.0e-141 503.8 267 91.8
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 7.1e-137 490.7 270 88.5
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 4.6e-136 488.0 268 88.4
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 1.1e-134 483.4 267 88.0
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 4.7e-133 478.0 259 88.8
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 1.6e-128 463.0 256 85.9
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 6.0e-128 461.1 256 86.3
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 5.1e-127 458.0 255 85.9
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 5.6e-126 454.5 254 86.2
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 1.2e-125 453.4 256 85.2
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 2.4e-124 449.1 260 85.0
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 2.4e-124 449.1 256 85.5
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 2.4e-124 449.1 256 85.5
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 4.0e-124 448.4 255 84.7
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 4.0e-124 448.4 255 84.7
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 8.9e-124 447.2 256 85.2
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 2.6e-123 445.7 256 84.8
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 7.6e-123 444.1 258 83.7
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 3.8e-122 441.8 259 84.2
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.1e-118 430.3 256 79.7
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 2.7e-112 409.1 260 79.6
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 3.5e-112 408.7 258 74.8
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 7.8e-112 407.5 258 74.4
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 3.0e-111 405.6 270 71.9
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 1.3e-109 400.2 256 73.8
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.3e-109 400.2 257 73.9
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.8e-109 399.1 256 73.0
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 2.4e-108 396.0 257 72.4
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 6.9e-108 394.4 258 71.3
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 6.9e-108 394.4 256 70.7
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 3.4e-107 392.1 255 71.4
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 7.6e-107 391.0 256 71.9
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 7.6e-107 391.0 257 69.6
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 2.2e-106 389.4 256 71.9
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 2.2e-106 389.4 275 68.4
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 2.2e-106 389.4 267 68.9
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 6.4e-106 387.9 257 70.4
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 1.1e-105 387.1 256 71.1
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.4e-105 386.7 259 70.3
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.4e-105 386.7 257 71.6
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 2.4e-105 386.0 256 71.5
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.4e-105 386.0 255 70.6
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.4e-105 384.8 258 70.5
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 5.4e-105 384.8 257 70.4
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 7.1e-105 384.4 259 69.1
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 9.3e-105 384.0 259 69.5
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 1.2e-104 383.6 256 70.3
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 1.6e-104 383.3 258 70.9
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.6e-104 383.3 261 69.3
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 1.6e-104 383.3 255 71.4
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 2.1e-104 382.9 259 70.3
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 2.1e-104 382.9 256 70.7
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 2.7e-104 382.5 251 72.9
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 3.5e-104 382.1 257 71.6
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 3.5e-104 382.1 256 71.5
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 3.5e-104 382.1 262 69.5
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 4.6e-104 381.7 256 71.1
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 6.0e-104 381.3 259 69.1
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.0e-103 380.6 256 70.3
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.3e-103 380.2 256 69.9
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.3e-103 380.2 257 69.3
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 2.3e-103 379.4 265 69.8
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 3.0e-103 379.0 257 71.2
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 3.0e-103 379.0 256 69.1
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 6.7e-103 377.9 265 69.1
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.1e-102 377.1 256 69.5
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 1.1e-102 377.1 267 66.7
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.1e-102 377.1 256 69.9
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.5e-102 376.7 256 69.5
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.9e-102 376.3 256 69.5
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 3.3e-102 375.6 265 68.7
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 3.3e-102 375.6 258 69.8
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 4.3e-102 375.2 266 67.7
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 5.6e-102 374.8 258 69.8
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 7.4e-102 374.4 262 68.3
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 2.1e-101 372.9 254 66.9
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 2.8e-101 372.5 256 68.8
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 4.8e-101 371.7 256 67.6
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 6.2e-101 371.3 262 69.1
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 8.1e-101 370.9 256 69.1
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 8.1e-101 370.9 262 67.2
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 1.1e-100 370.5 273 65.9
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 6.9e-100 367.9 256 66.8
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.5e-99 366.7 262 67.6
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 5.8e-99 364.8 256 66.0
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 7.6e-99 364.4 254 68.1
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 7.6e-99 364.4 252 68.3
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.0e-98 364.0 254 68.1
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 3.8e-98 362.1 255 66.3
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 4.9e-98 361.7 263 66.2
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 6.5e-98 361.3 258 65.1
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 8.4e-98 360.9 260 66.2
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 4.2e-97 358.6 291 60.8
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 7.1e-97 357.8 256 67.6
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 9.3e-97 357.5 263 69.2
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.6e-96 356.7 257 65.0
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 2.1e-96 356.3 258 65.9
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 3.5e-96 355.5 271 63.1
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 7.9e-96 354.4 262 66.0
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.8e-95 353.2 254 66.9
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 7.4e-94 347.8 263 63.9
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 1.3e-93 347.1 240 69.6
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 1.6e-93 346.7 256 64.5
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 2.1e-93 346.3 316 55.1
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 6.2e-93 344.7 256 63.7
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.2e-91 340.5 261 66.3
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.0e-91 339.7 264 60.2
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 3.4e-91 339.0 259 62.2
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 2.2e-90 336.3 211 73.5
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 1.9e-89 333.2 217 71.9
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 7.1e-89 331.3 257 60.3
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.2e-88 330.5 212 72.6
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 7.9e-88 327.8 211 72.5
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 6.7e-87 324.7 211 74.4
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.9e-86 323.2 273 57.9
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 1.1e-84 317.4 236 64.8
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 4.5e-83 312.0 243 60.9
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 1.3e-82 310.5 196 75.0
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 1.1e-81 307.4 212 68.4
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 8.8e-79 297.7 231 59.3
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 1.5e-78 297.0 204 71.1
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 2.5e-78 296.2 195 70.3
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 7.4e-78 294.7 195 69.7
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 9.7e-78 294.3 195 71.3
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 8.2e-77 291.2 190 73.2
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 4.5e-75 285.4 180 75.0
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 5.9e-75 285.0 230 57.0
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 8.5e-74 281.2 264 53.0
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 2.5e-73 279.6 253 53.4
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 2.6e-70 269.6 310 48.7
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 4.8e-69 265.4 170 75.3
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 2.4e-68 263.1 227 59.0
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.5e-67 260.4 360 43.3
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 1.3e-61 240.7 182 64.8
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 7.0e-60 235.0 136 83.1
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.7e-59 231.5 272 49.3
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.5e-57 226.5 232 48.3
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 6.8e-55 218.4 156 65.4
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 5.0e-50 202.2 179 54.2
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 1.9e-49 200.3 211 50.7
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 2.1e-48 196.8 146 65.1
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 2.2e-45 186.8 178 52.8
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.2e-45 186.8 135 65.2
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.8e-42 176.0 132 64.4
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 1.9e-41 173.7 250 36.0
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.2e-38 164.5 108 70.4
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 5.7e-38 162.2 303 32.3
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 1.4e-36 157.5 280 35.0
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 1.5e-33 147.5 93 71.0
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.9e-29 132.5 132 53.8
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.9e-29 132.5 172 41.3
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 3.2e-28 129.8 99 64.6
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.3e-26 124.4 165 41.2
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 2.8e-24 116.7 173 43.9
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 2.6e-22 110.2 78 60.3
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 5.6e-17 92.4 52 84.6
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 5.6e-17 92.4 52 84.6
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.2e-16 91.3 118 40.7
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 3.6e-16 89.7 48 89.6
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.6e-16 89.7 83 51.8
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 4.7e-16 89.4 55 76.4
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 3.4e-14 83.2 61 68.9
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 4.1e-12 76.3 60 61.7
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.7e-10 70.9 56 53.6
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 6.2e-08 62.4 42 59.5
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 4.4e-06 56.2 34 64.7


User provided reference genes

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