Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.5e-207 724.5 418 100.0
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 8.3e-169 597.4 420 85.5
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.3e-141 505.8 420 73.6
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 3.0e-134 482.6 419 70.2
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 7.3e-133 478.0 423 68.8
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 2.1e-132 476.5 420 70.2
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 6.9e-131 471.5 422 69.9
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 6.9e-131 471.5 422 69.9
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 1.1e-128 464.2 416 69.7
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 1.1e-128 464.2 416 69.7
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 1.1e-128 464.2 416 69.7
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 3.6e-124 449.1 420 67.4
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 3.6e-124 449.1 420 67.4
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.6e-119 433.7 420 67.9
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 3.7e-108 396.0 403 65.5
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.0e-106 390.2 435 60.2
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 4.2e-104 382.5 428 61.2
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 2.3e-102 376.7 436 61.7
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 6.3e-100 368.6 426 57.3
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 4.1e-99 365.9 298 75.5
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.9e-97 359.8 432 58.1
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.5e-96 356.7 424 56.6
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 7.4e-93 345.1 431 57.5
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 3.4e-90 336.3 437 56.5
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 2.9e-89 333.2 431 57.3
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 9.7e-85 318.2 425 54.6
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 6.9e-83 312.0 428 54.9
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 2.2e-81 307.0 430 54.9
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 6.5e-81 305.4 429 54.5
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 6.5e-81 305.4 429 54.5
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.2e-79 301.2 425 52.5
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 4.4e-61 239.6 427 45.2
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.7e-60 237.7 417 44.6
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.2e-60 237.3 428 44.9
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 6.3e-60 235.7 428 44.9
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.8e-59 234.2 425 44.9
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.3e-57 228.0 419 46.1
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 2.9e-57 226.9 411 44.5
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 4.0e-54 216.5 421 46.6
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.5e-53 214.5 430 43.5
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 7.5e-53 212.2 437 43.7
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.3e-52 211.5 414 44.0
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.8e-52 210.3 413 44.6
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.8e-52 210.3 425 45.6
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 4.9e-52 209.5 426 44.1
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 8.3e-52 208.8 421 42.8
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.4e-51 208.0 415 43.4
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 7.0e-51 205.7 421 43.0
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 3.5e-50 203.4 416 43.0
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 5.9e-50 202.6 413 41.6
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.9e-48 197.6 418 40.0
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.5e-48 197.2 426 41.5
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 5.6e-48 196.1 421 43.2
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 1.2e-47 194.9 416 41.1
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.2e-47 194.9 425 42.1
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 3.6e-47 193.4 415 42.7
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 6.1e-47 192.6 430 41.2
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 2.3e-46 190.7 420 38.6
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 3.0e-46 190.3 408 45.3
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.4e-45 186.8 408 43.6
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 4.4e-45 186.4 440 42.3
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 2.9e-44 183.7 426 41.8
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 3.7e-44 183.3 424 40.8
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 3.7e-44 183.3 418 40.2
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 4.9e-44 183.0 417 38.6
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 8.3e-44 182.2 419 39.6
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 1.1e-43 181.8 412 42.0
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 1.8e-43 181.0 440 42.0
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 3.2e-43 180.3 408 39.0
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 3.2e-43 180.3 420 39.3
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 5.4e-43 179.5 421 42.3
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 5.4e-43 179.5 433 43.6
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 5.4e-43 179.5 420 39.3
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 7.0e-43 179.1 404 45.3
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 7.0e-43 179.1 408 44.1
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 7.0e-43 179.1 419 43.0
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 2.0e-42 177.6 424 40.6
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 2.0e-42 177.6 428 43.9
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 3.5e-42 176.8 408 44.1
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 7.8e-42 175.6 426 39.9
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 1.3e-41 174.9 422 39.6
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 1.3e-41 174.9 426 43.7
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.7e-41 174.5 420 38.8
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 3.9e-41 173.3 419 43.4
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 3.9e-41 173.3 430 38.1
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 3.9e-41 173.3 415 42.7
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 6.6e-41 172.6 425 39.1
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.5e-40 171.4 405 40.7
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.5e-40 170.6 422 38.4
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 2.5e-40 170.6 422 37.0
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 3.3e-40 170.2 417 42.7
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 6.2e-39 166.0 421 44.2
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 6.2e-39 166.0 407 41.3
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 6.2e-39 166.0 433 42.3
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 8.0e-39 165.6 410 39.5
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.4e-38 164.9 406 42.6
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 2.3e-38 164.1 455 39.8
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 2.3e-38 164.1 413 38.0
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 2.3e-38 164.1 418 43.3
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 3.1e-38 163.7 409 39.6
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 4.0e-38 163.3 365 43.3
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 5.2e-38 162.9 413 39.0
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 8.9e-38 162.2 396 40.7
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 2.6e-37 160.6 423 42.1
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 2.6e-37 160.6 441 39.5
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 3.4e-37 160.2 408 42.4
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 7.5e-37 159.1 362 39.2
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 7.5e-37 159.1 420 38.1
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 6.4e-36 156.0 424 38.4
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 2.4e-35 154.1 400 43.2
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 7.0e-35 152.5 425 37.9
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 2.7e-34 150.6 385 39.7
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.7e-33 147.9 424 35.1
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 5.0e-33 146.4 441 35.6
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 2.5e-32 144.1 177 56.5
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.5e-32 144.1 333 40.8
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 3.3e-32 143.7 429 34.7
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 3.3e-32 143.7 194 52.6
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 9.5e-32 142.1 426 37.1
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.6e-31 141.4 459 32.5
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 2.8e-31 140.6 407 39.3
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 6.2e-31 139.4 216 48.6
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.8e-30 137.9 399 35.3
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 3.1e-30 137.1 423 31.9
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 4.0e-30 136.7 424 35.4
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 6.8e-30 136.0 362 35.4
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 1.2e-26 125.2 375 35.2
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.3e-25 121.7 402 35.3
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 2.8e-23 114.0 362 37.8
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 6.2e-23 112.8 376 33.0
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.9e-20 104.0 308 37.3
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 6.4e-20 102.8 397 32.7
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 2.4e-19 100.9 263 38.0
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 9.2e-19 99.0 385 33.5
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 1.1e-16 92.0 367 33.5
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 1.5e-16 91.7 408 30.6
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 5.2e-14 83.2 116 50.0
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.2e-13 82.0 283 34.3
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 8.7e-09 65.9 219 34.7
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 3.3e-08 63.9 218 33.9
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 6.9e-06 56.2 178 33.1


User provided reference genes

Program Settings