Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL133U10030 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.4e-112 408.3 200 100.0
AL3G39670 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.7e-106 388.3 199 95.5
AL3G39690 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-83 313.5 158 94.9
Thhalv10022100m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.8e-42 176.0 158 59.5
AT3G48220 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 2.3e-36 156.4 159 54.7
Thhalv10009727m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 8.9e-36 154.5 160 51.9
Carub.0004s2674 Capsella rubella HOM05D002743 ORTHO05D002895 1.4e-33 147.1 155 52.3
Thhalv10000704m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.9e-30 136.7 155 49.7
BraA09t36068Z Brassica rapa HOM05D002743 ORTHO05D002895 1.2e-29 134.0 167 47.9
A09p04310 Brassica napus HOM05D002743 ORTHO05D002895 1.6e-29 133.7 167 47.9
SpUn0003_0080 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.6e-29 133.7 177 44.1
AL5G17830 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.1e-28 129.4 155 48.4
C09p04580 Brassica napus HOM05D002743 ORTHO05D002895 5.2e-28 128.6 166 45.2
AT3G28223 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 6.8e-28 128.3 157 47.1
AL4G45790 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.8e-27 125.2 129 49.6
CARHR149600 Cardamine hirsuta HOM05D002743 ORTHO05D002895 7.5e-27 124.8 156 48.1
BcaC06g36618 Brassica carinata HOM05D002743 ORTHO05D002895 8.3e-26 121.3 162 44.4
BcaC06g36619 Brassica carinata HOM05D002743 ORTHO05D002895 8.3e-26 121.3 162 44.4
A02p35850 Brassica napus HOM05D002743 ORTHO05D002895 8.3e-26 121.3 153 45.1
BraA02t08585Z Brassica rapa HOM05D002743 ORTHO05D002895 8.3e-26 121.3 153 45.1
BraA02t08589Z Brassica rapa HOM05D002743 ORTHO05D002895 8.3e-26 121.3 153 45.1
AL5G17810 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-25 120.9 159 48.4
AL8G22310 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-25 120.9 177 41.2
BcaC03g17512 Brassica carinata HOM05D002743 ORTHO05D002895 1.1e-25 120.9 153 45.1
C02p54750 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-25 120.9 153 45.1
BolC2t11536H Brassica oleracea HOM05D002743 ORTHO05D002895 1.1e-25 120.9 153 45.1
C07p02110 Brassica napus HOM05D002743 ORTHO05D002895 1.4e-25 120.6 162 42.6
AL34U10080 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.4e-25 119.8 179 40.2
AL8G22320 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.4e-25 119.8 179 40.2
Carub.0005s0683 Capsella rubella HOM05D002743 ORTHO05D002895 2.4e-25 119.8 155 42.6
AT3G28330 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.6e-24 117.1 151 43.7
BcaC02g09623 Brassica carinata HOM05D002743 ORTHO05D002895 2.0e-24 116.7 156 46.2
BolC4t26059H Brassica oleracea HOM05D002743 ORTHO05D002895 2.0e-24 116.7 156 46.2
CARHR292690 Cardamine hirsuta HOM05D002743 ORTHO05D002895 7.8e-24 114.8 156 44.2
AT3G28280 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.7e-23 113.6 178 42.1
Carub.0005s0673 Capsella rubella HOM05D002743 ORTHO05D002895 2.3e-23 113.2 157 40.8
Carub.0005s0675 Capsella rubella HOM05D002743 ORTHO05D002895 2.5e-22 109.8 151 43.0
BcaC04g23794 Brassica carinata HOM05D002743 ORTHO05D002895 3.3e-22 109.4 162 41.4
Thhalv10009395m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 4.3e-22 109.0 158 41.8
C09p04610 Brassica napus HOM05D002743 ORTHO05D002895 9.5e-22 107.8 162 40.7
BolC9t53389H Brassica oleracea HOM05D002743 ORTHO05D002895 9.5e-22 107.8 162 40.7
A03p54310 Brassica napus HOM05D002743 ORTHO05D002895 1.6e-21 107.1 164 39.6
A04p11100 Brassica napus HOM05D002743 ORTHO05D002895 1.8e-20 103.6 170 38.8
BraA04t16772Z Brassica rapa HOM05D002743 ORTHO05D002895 2.3e-20 103.2 170 38.2
BcaNung01438 Brassica carinata HOM05D002743 ORTHO05D002895 5.2e-20 102.1 162 39.5
BolC7t45770H Brassica oleracea HOM05D002743 ORTHO05D002895 5.2e-20 102.1 162 39.5
C04p44830 Brassica napus HOM05D002743 ORTHO05D002895 1.2e-19 100.9 170 38.2
CARHR286050 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.5e-19 100.5 159 37.1
AL5G17850 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.6e-19 99.8 119 47.9
BcaC04g23797 Brassica carinata HOM05D002743 ORTHO05D002895 2.6e-19 99.8 150 42.0
BolC9t53387H Brassica oleracea HOM05D002743 ORTHO05D002895 2.6e-19 99.8 163 38.7
A02p35860 Brassica napus HOM05D002743 ORTHO05D002895 3.4e-19 99.4 161 37.9
BcaC02g09624 Brassica carinata HOM05D002743 ORTHO05D002895 4.4e-19 99.0 170 38.2
BolC4t26061H Brassica oleracea HOM05D002743 ORTHO05D002895 4.4e-19 99.0 170 38.2
Carub.0005s0676 Capsella rubella HOM05D002743 ORTHO05D002895 5.8e-19 98.6 152 40.1
BcaC06g35723 Brassica carinata HOM05D002743 ORTHO05D002895 1.3e-18 97.4 170 38.2
BolC7t41637H Brassica oleracea HOM05D002743 ORTHO05D002895 1.3e-18 97.4 170 38.2
THA.LOC104823978 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 2.9e-18 96.3 169 34.3
A07p07740 Brassica napus HOM05D002743 ORTHO05D002895 8.3e-18 94.7 171 36.8
C07p11650 Brassica napus HOM05D002743 ORTHO05D002895 8.3e-18 94.7 170 37.6
THA.LOC104824016 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 8.3e-18 94.7 170 34.7
BraA07t28566Z Brassica rapa HOM05D002743 ORTHO05D002895 1.1e-17 94.4 171 36.8
Thhalv10024137m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.4e-17 94.0 153 36.6
Carub.0008s0568 Capsella rubella HOM05D002743 ORTHO05D002895 1.9e-17 93.6 124 45.2
Carub.0006s2838 Capsella rubella HOM05D002743 ORTHO05D002895 3.5e-16 89.4 167 37.1
BraA03t14493Z Brassica rapa HOM05D002743 ORTHO05D002895 1.7e-15 87.0 134 41.0
AT3G23950 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.0e-15 86.3 159 34.0
AL3G39540 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.1e-15 85.5 160 35.6
BcaC04g23796 Brassica carinata HOM05D002743 ORTHO05D002895 5.1e-15 85.5 140 40.7
CARHR286560 Cardamine hirsuta HOM05D002743 ORTHO05D002895 6.6e-15 85.1 155 34.8
AL5G18350 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-14 84.3 158 32.3
AL6G43490 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-14 84.3 193 31.6
BcaB07g33451 Brassica carinata HOM05D002743 ORTHO05D002895 4.3e-14 82.4 165 33.9
A06p03440 Brassica napus HOM05D002743 ORTHO05D002895 4.3e-14 82.4 159 35.8
C06p04770 Brassica napus HOM05D002743 ORTHO05D002895 4.3e-14 82.4 159 36.5
THA.LOC104805970 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 4.3e-14 82.4 163 33.7
Aa31sc58G40 Aethionema arabicum HOM05D002743 ORTHO05D002895 5.6e-14 82.0 197 30.5
Thhalv10029227m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 5.6e-14 82.0 154 35.1
AL1G57560 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.1e-13 80.1 223 30.5
C04p44820 Brassica napus HOM05D002743 ORTHO05D002895 2.1e-13 80.1 97 49.5
BraA06t23552Z Brassica rapa HOM05D002743 ORTHO05D002895 2.1e-13 80.1 160 34.4
CARHR033610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.1e-13 80.1 202 32.7
BcaC08g43177 Brassica carinata HOM05D002743 ORTHO05D002895 3.6e-13 79.3 159 35.8
AL6G47130 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.2e-13 78.6 167 32.9
A10p18240 Brassica napus HOM05D002743 ORTHO05D002895 6.2e-13 78.6 120 44.2
Carub.0005s1587 Capsella rubella HOM05D002743 ORTHO05D002895 6.2e-13 78.6 175 33.7
A05p20390 Brassica napus HOM05D002743 ORTHO05D002895 8.1e-13 78.2 171 36.8
AL3G39550 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.8e-12 77.0 197 29.4
Thhalv10028185m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.4e-12 76.6 132 37.9
Sp3g21990 Schrenkiella parvula HOM05D002743 ORTHO05D002895 2.4e-12 76.6 200 29.5
BolC9t58491H Brassica oleracea HOM05D002743 ORTHO05D002895 4.0e-12 75.9 153 34.0
AL5G16370 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.2e-12 75.5 162 36.4
Carub.0003s2455 Capsella rubella HOM05D002743 ORTHO05D002895 5.2e-12 75.5 158 32.3
CARHR131260 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.2e-12 75.5 133 39.1
BcaC06g35666 Brassica carinata HOM05D002743 ORTHO05D002895 8.9e-12 74.7 159 31.4
BolC6t35599H Brassica oleracea HOM05D002743 ORTHO05D002895 8.9e-12 74.7 176 32.4
BraA02t08588Z Brassica rapa HOM05D002743 ORTHO05D002895 8.9e-12 74.7 80 48.8
AT3G23970 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.2e-11 74.3 159 30.2
BolC1t01435H Brassica oleracea HOM05D002743 ORTHO05D002895 1.2e-11 74.3 167 37.7
BcaB06g26601 Brassica carinata HOM05D002743 ORTHO05D002895 1.5e-11 73.9 200 29.0
BraA10t43899Z Brassica rapa HOM05D002743 ORTHO05D002895 1.5e-11 73.9 120 41.7
CARHR286570 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.5e-11 73.9 157 32.5
BcaB07g31193 Brassica carinata HOM05D002743 ORTHO05D002895 2.0e-11 73.6 148 32.4
AT1G49990 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 2.6e-11 73.2 168 33.9
BolC7t41698H Brassica oleracea HOM05D002743 ORTHO05D002895 2.6e-11 73.2 159 30.8
BraA01t01181Z Brassica rapa HOM05D002743 ORTHO05D002895 2.6e-11 73.2 162 34.6
A02p35840 Brassica napus HOM05D002743 ORTHO05D002895 4.4e-11 72.4 85 45.9
A02p35880 Brassica napus HOM05D002743 ORTHO05D002895 5.8e-11 72.0 65 58.5
A09p17800 Brassica napus HOM05D002743 ORTHO05D002895 5.8e-11 72.0 148 34.5
C07p12300 Brassica napus HOM05D002743 ORTHO05D002895 5.8e-11 72.0 159 30.2
BraA09t37413Z Brassica rapa HOM05D002743 ORTHO05D002895 5.8e-11 72.0 148 34.5
BraA05t20946Z Brassica rapa HOM05D002743 ORTHO05D002895 7.6e-11 71.6 171 34.5
BcaB08g37317 Brassica carinata HOM05D002743 ORTHO05D002895 9.9e-11 71.2 120 41.7
C09p56250 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-10 70.9 149 33.6
BraA01t02518Z Brassica rapa HOM05D002743 ORTHO05D002895 1.3e-10 70.9 120 39.2
Sp2g04630 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.7e-10 70.5 164 37.2
A01p12360 Brassica napus HOM05D002743 ORTHO05D002895 2.2e-10 70.1 158 35.4
BcaB03g16763 Brassica carinata HOM05D002743 ORTHO05D002895 2.9e-10 69.7 161 32.3
C09p56220 Brassica napus HOM05D002609 ORTHO05D002820 2.9e-10 69.7 136 34.6
CARHR100270 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.9e-10 69.7 164 34.1
AT3G26010 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.8e-10 69.3 170 32.4
BolC9t58494H Brassica oleracea HOM05D002743 ORTHO05D002895 3.8e-10 69.3 135 34.8
BcaB08g36410 Brassica carinata HOM05D002743 ORTHO05D002895 4.9e-10 68.9 156 33.3
BcaC04g22203 Brassica carinata HOM05D002743 ORTHO05D002895 4.9e-10 68.9 148 33.8
A01p25990 Brassica napus HOM05D002743 ORTHO05D002895 4.9e-10 68.9 120 38.3
A07p08150 Brassica napus HOM05D002743 ORTHO05D002895 4.9e-10 68.9 159 30.2
C09p22150 Brassica napus HOM05D002743 ORTHO05D002895 4.9e-10 68.9 148 33.8
BraA07t28599Z Brassica rapa HOM05D002743 ORTHO05D002895 4.9e-10 68.9 159 30.2
AL1G27780 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.4e-10 68.6 160 30.6
Thhalv10011517m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 6.4e-10 68.6 165 33.3
A10p19880 Brassica napus HOM05D002743 ORTHO05D002895 8.4e-10 68.2 120 38.3
AT1G15680 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.1e-09 67.8 161 32.3
Aa31sc58G10 Aethionema arabicum HOM05D002743 ORTHO05D002895 1.4e-09 67.4 171 30.4
BolC2t06988H Brassica oleracea HOM05D002743 ORTHO05D002895 1.4e-09 67.4 162 29.6
BcaC04g19490 Brassica carinata HOM05D002743 ORTHO05D002895 2.4e-09 66.6 120 38.3
C09p55180 Brassica napus HOM05D002743 ORTHO05D002895 2.4e-09 66.6 120 38.3
AL5G14680 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.2e-09 66.2 157 31.2
BcaB08g36564 Brassica carinata HOM05D002743 ORTHO05D002895 3.2e-09 66.2 120 37.5
BolC9t55130H Brassica oleracea HOM05D002743 ORTHO05D002895 4.1e-09 65.9 148 32.4
BraA10t43989Z Brassica rapa HOM05D002743 ORTHO05D002895 5.4e-09 65.5 123 38.2
BcaB07g33449 Brassica carinata HOM05D002743 ORTHO05D002895 7.1e-09 65.1 172 31.4
Thhalv10027176m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 7.1e-09 65.1 159 32.1
HanXRQChr17g0547181 Helianthus annuus HOM05D008898 ORTHO05D001155 7.1e-09 65.1 142 33.1
Sp5g25320 Schrenkiella parvula HOM05D002743 ORTHO05D002895 9.2e-09 64.7 145 29.0
CARHR025250 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.2e-08 64.3 156 34.6
A10p19100 Brassica napus HOM05D002743 ORTHO05D002895 1.6e-08 63.9 120 38.3
C06p04690 Brassica napus HOM05D002743 ORTHO05D002895 2.7e-08 63.2 157 28.7
BcaB07g33448 Brassica carinata HOM05D002743 ORTHO05D002895 4.6e-08 62.4 160 32.5
BcaC08g43169 Brassica carinata HOM05D002743 ORTHO05D002895 4.6e-08 62.4 157 29.3
CARHR158010 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.6e-08 62.4 64 50.0
AL6G43570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.0e-08 62.0 146 29.5
Carub.0005s0386 Capsella rubella HOM05D002743 ORTHO05D002895 7.8e-08 61.6 157 29.3
AL5G18360 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.0e-07 61.2 98 39.8
BcaB07g33444 Brassica carinata HOM05D002743 ORTHO05D002895 1.0e-07 61.2 164 29.9
AL1G67480 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.3e-07 60.8 160 34.4
A02p05860 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-07 60.8 162 29.0
BraA02t05538Z Brassica rapa HOM05D002743 ORTHO05D002895 1.3e-07 60.8 162 29.0
AL7G33200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.3e-07 60.1 157 34.4
Carub.0003s2456 Capsella rubella HOM05D002743 ORTHO05D002895 2.3e-07 60.1 119 29.4
AL6G43580 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.0e-07 59.7 146 30.1
AL6G48200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.0e-07 59.7 152 30.9
BcaB06g27161 Brassica carinata HOM05D002743 ORTHO05D002895 3.0e-07 59.7 105 36.2
BolC6t35602H Brassica oleracea HOM05D002743 ORTHO05D002895 3.9e-07 59.3 111 36.0
Carub.0007s1889 Capsella rubella HOM05D002743 ORTHO05D002895 3.9e-07 59.3 156 31.4
AL6G48160 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.7e-07 58.2 161 26.7
Carub.0006s3248 Capsella rubella HOM05D002743 ORTHO05D002895 8.7e-07 58.2 161 30.4
CARHR040090 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.1e-06 57.8 164 31.7
Lsat_1_v5_gn_0_31161 Lactuca sativa HOM05D008898 ORTHO05D001155 1.1e-06 57.8 111 32.4
BNapus_Darmor_BZH_scaffold_38p02050 Brassica napus HOM05D002743 ORTHO05D002895 1.5e-06 57.4 108 35.2
Carub.0006s3136 Capsella rubella HOM05D002743 ORTHO05D002895 1.5e-06 57.4 135 30.4
Nitab4.5_0000207g0170 Nicotiana tabacum HOM05D001729 ORTHO05D001155 4.3e-06 55.8 101 31.7
Nitab4.5_0002383g0130 Nicotiana tabacum HOM05D008898 ORTHO05D001155 4.3e-06 55.8 128 27.3
HanXRQChr15g0474391 Helianthus annuus HOM05D008898 ORTHO05D001155 9.6e-06 54.7 149 30.9


User provided reference genes

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