Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p31120 Brassica napus HOM05D003042 ORTHO05D024505 7.6e-36 153.3 77 100.0
C03p23360 Brassica napus HOM05D003042 ORTHO05D024505 9.1e-13 76.6 52 75.0
BcaB02g07258 Brassica carinata HOM05D003042 ORTHO05D003670 3.9e-08 61.2 31 87.1
BcaB05g25236 Brassica carinata HOM05D003042 ORTHO05D003670 3.9e-08 61.2 31 87.1
A02p23240 Brassica napus HOM05D003042 ORTHO05D003670 3.9e-08 61.2 31 87.1
A07p45040 Brassica napus HOM05D003042 ORTHO05D003670 3.9e-08 61.2 31 87.1
C02p37000 Brassica napus HOM05D003042 ORTHO05D003670 3.9e-08 61.2 31 87.1
C06p53860 Brassica napus HOM05D003042 ORTHO05D003670 3.9e-08 61.2 31 87.1
BolC2t09716H Brassica oleracea HOM05D003042 ORTHO05D003670 3.9e-08 61.2 31 87.1
BolC6t40401H Brassica oleracea HOM05D003042 ORTHO05D003670 3.9e-08 61.2 31 87.1
BraA02t07322Z Brassica rapa HOM05D003042 ORTHO05D003670 3.9e-08 61.2 31 87.1
BraA07t32007Z Brassica rapa HOM05D003042 ORTHO05D003670 3.9e-08 61.2 31 87.1
FAN04G1953 Fragaria x ananassa HOM05D003042 ORTHO05D003670 3.9e-08 61.2 39 69.2
FAN26G0050 Fragaria x ananassa HOM05D003042 ORTHO05D003670 5.1e-08 60.8 32 84.4
Medtr1g492860 Medicago truncatula HOM05D003042 ORTHO05D003670 8.8e-08 60.1 31 80.6
C09p71720 Brassica napus HOM05D003042 ORTHO05D003670 1.1e-07 59.7 26 100.0
CiPaw.01G252700 Carya illinoinensis HOM05D003042 ORTHO05D003670 1.1e-07 59.7 31 83.9
CiPaw.15G089000 Carya illinoinensis HOM05D003042 ORTHO05D003670 1.1e-07 59.7 31 83.9
CsaV3_5G039870 Cucumis sativus L. HOM05D003042 ORTHO05D003670 1.1e-07 59.7 31 83.9
Sp5g35090 Schrenkiella parvula HOM05D003042 ORTHO05D003670 1.1e-07 59.7 31 83.9
BcaC08g45331 Brassica carinata HOM05D003042 ORTHO05D003670 1.5e-07 59.3 31 83.9
A07p26780 Brassica napus HOM05D003042 ORTHO05D003670 1.5e-07 59.3 31 83.9
FvH4_1g21750 Fragaria vesca HOM05D003042 ORTHO05D003670 1.5e-07 59.3 31 83.9
FvH4_5g10180 Fragaria vesca HOM05D003042 ORTHO05D003670 1.5e-07 59.3 36 72.2
FvH4_5g30850 Fragaria vesca HOM05D003042 ORTHO05D003670 1.5e-07 59.3 35 77.1
FAN18G2061 Fragaria x ananassa HOM05D003042 ORTHO05D003670 1.5e-07 59.3 36 72.2
FAN23G0925 Fragaria x ananassa HOM05D003042 ORTHO05D003670 1.5e-07 59.3 31 83.9
FAN28G0628 Fragaria x ananassa HOM05D003042 ORTHO05D003670 1.5e-07 59.3 31 83.9
MD08G1221600 Malus domestica HOM05D003042 ORTHO05D003670 1.5e-07 59.3 31 83.9
MD15G1412500 Malus domestica HOM05D003042 ORTHO05D003670 1.5e-07 59.3 31 83.9
Prupe.1G558700 Prunus persica HOM05D003042 ORTHO05D003670 1.5e-07 59.3 31 83.9
Aqoxy6G00507 Aquilegia oxysepala HOM05D003042 ORTHO05D003670 2.0e-07 58.9 31 80.6
AL2G40770 Arabidopsis lyrata HOM05D003042 ORTHO05D003670 2.0e-07 58.9 31 83.9
AT1G80670 Arabidopsis thaliana HOM05D003042 ORTHO05D003670 2.0e-07 58.9 31 83.9
BraA07t30321Z Brassica rapa HOM05D003042 ORTHO05D003670 2.0e-07 58.9 31 80.6
CSS0003437 Camellia sinensis var. sinensis HOM05D003042 ORTHO05D003670 2.0e-07 58.9 31 80.6
Carub.0002s2689 Capsella rubella HOM05D003042 ORTHO05D003670 2.0e-07 58.9 31 83.9
CARHR073850 Cardamine hirsuta HOM05D003042 ORTHO05D003670 2.0e-07 58.9 31 83.9
Dinv24214 Davidia involucrata HOM05D003042 ORTHO05D003670 2.0e-07 58.9 31 80.6
Thhalv10018796m.g Eutrema salsugineum HOM05D003042 ORTHO05D003670 2.0e-07 58.9 31 83.9
TWI14G0651 Tripterygium wilfordii HOM05D003042 ORTHO05D003670 2.0e-07 58.9 31 80.6
C06p29410 Brassica napus HOM05D003042 ORTHO05D003670 2.6e-07 58.5 29 86.2
BolC6t38106H Brassica oleracea HOM05D003042 ORTHO05D003670 2.6e-07 58.5 29 86.2
DCAR_021842 Daucus carota HOM05D003042 ORTHO05D003670 2.6e-07 58.5 31 83.9
FAN13G0196 Fragaria x ananassa HOM05D003042 ORTHO05D003670 2.6e-07 58.5 31 80.6
FAN18G0772 Fragaria x ananassa HOM05D003042 ORTHO05D003670 2.6e-07 58.5 36 72.2
FAN18G2183 Fragaria x ananassa HOM05D003042 ORTHO05D003670 2.6e-07 58.5 31 83.9
Gohir.A05G120500 Gossypium hirsutum HOM05D003042 ORTHO05D003670 2.6e-07 58.5 31 77.4
Gohir.D05G121500 Gossypium hirsutum HOM05D003042 ORTHO05D003670 2.6e-07 58.5 31 77.4
Lsat_1_v5_gn_9_117540 Lactuca sativa HOM05D003042 ORTHO05D003670 2.6e-07 58.5 31 83.9
Manes.04G104800 Manihot esculenta HOM05D003042 ORTHO05D003670 2.6e-07 58.5 31 80.6
Sed0018036 Sechium edule HOM05D003042 ORTHO05D003670 2.6e-07 58.5 31 80.6
MSTRG.16568 Avicennia marina HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 77.4
Ca_00120_v3 Cicer arietinum L. HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 83.9
Ca_10499_v3 Cicer arietinum L. HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
MELO3C022166.2 Cucumis melo HOM05D003042 ORTHO05D003670 3.3e-07 58.2 28 89.3
ECA240G1546 Erigeron canadensis HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
Migut.B00632 Erythranthe guttata HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
FAN04G2863 Fragaria x ananassa HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
FAN08G0963 Fragaria x ananassa HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
Lj3g0027683 Lotus japonicus HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
Medtr8g068875 Medicago truncatula HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
Phvul.003G032400 Phaseolus vulgaris HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
Psat0s1783g0040 Pisum sativum HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
Psat6g176840 Pisum sativum HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
Prupe.5G049100 Prunus persica HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
Prupe.7G019500 Prunus persica HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
PGR031G1207 Punica granatum HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
THA.LOC104812445 Tarenaya hassleriana HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 83.9
TPR.G2525 Trifolium pratense HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
TPR.G2563 Trifolium pratense HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
TWI12G0856 Tripterygium wilfordii HOM05D003042 ORTHO05D003670 3.3e-07 58.2 31 80.6
Actinidia38973 Actinidia chinensis HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 80.6
Aa31LG4G950 Aethionema arabicum HOM05D003042 ORTHO05D003670 4.4e-07 57.8 28 89.3
CSS0010904 Camellia sinensis var. sinensis HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 80.6
CSS0033117 Camellia sinensis var. sinensis HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 80.6
CAN.G1528.5 Capsicum annuum HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 80.6
COL.COLO4_26659 Corchorus olitorius HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 77.4
HanXRQChr17g0547761 Helianthus annuus HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 80.6
Hma1.2p1_1341F.1_g276910 Hydrangea macrophylla HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 80.6
Lalb_Chr25g0279011 Lupinus albus HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 83.9
Nn5g28955 Nelumbo nucifera HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 80.6
QL05p034606 Quercus lobata HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 80.6
QL05p034855 Quercus lobata HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 80.6
Rhsim11G0134900 Rhododendron simsii HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 80.6
SalBow5G3148 Salvia bowleyana HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 77.4
Thecc.06G038500 Theobroma cacao HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 77.4
TAR376G0906 Trochodendron aralioides HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 80.6
GSVIVG01017573001 Vitis vinifera HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 80.6
GSVIVG01029758001 Vitis vinifera HOM05D003042 ORTHO05D003670 4.4e-07 57.8 31 80.6
Duzib160G0927 Durio zibethinus HOM05D003042 ORTHO05D003670 5.7e-07 57.4 31 74.2
Duzib192G0087 Durio zibethinus HOM05D003042 ORTHO05D003670 5.7e-07 57.4 31 74.2
Lalb_Chr04g0264341 Lupinus albus HOM05D003042 ORTHO05D003670 5.7e-07 57.4 31 80.6
MD15G1412300 Malus domestica HOM05D003042 ORTHO05D003670 5.7e-07 57.4 31 80.6
Oeu047378.2 Olea europaea HOM05D003042 ORTHO05D003670 5.7e-07 57.4 31 74.2
Phvul.006G208000 Phaseolus vulgaris HOM05D003042 ORTHO05D003670 5.7e-07 57.4 31 80.6
Hund06531 Selenicereus undatus HOM05D003042 ORTHO05D003670 5.7e-07 57.4 30 83.3
TPR.G13617 Trifolium pratense HOM05D003042 ORTHO05D003670 5.7e-07 57.4 31 80.6
VMungo0540G1529 Vigna mungo HOM05D003042 ORTHO05D003670 5.7e-07 57.4 31 80.6
Aqoxy5G00983 Aquilegia oxysepala HOM05D000003 ORTHO05D008335 7.4e-07 57.0 27 88.9
arahy.Tifrunner.gnm1.ann1.50NPKB Arachis hypogaea HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
arahy.Tifrunner.gnm1.ann1.HI3N32 Arachis hypogaea HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
MSTRG.27785 Avicennia marina HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 74.2
CANSAT54G0208 Cannabis sativa HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
CDE10G1271 Ceratophyllum demersum HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
CDE10G1274 Ceratophyllum demersum HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
Haze_13445 Corylus avellana HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
DCAR_001799 Daucus carota HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
Migut.N01008 Erythranthe guttata HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 77.4
Glyma.08G180700 Glycine max HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
Glyma.15G051700 Glycine max HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
Gorai.009G125000 Gossypium raimondii HOM05D003042 ORTHO05D003670 7.4e-07 57.0 28 82.1
Lsat_1_v5_gn_7_79840 Lactuca sativa HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
Lj9A319T64 Lonicera japonica HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
Medtr2g008410 Medicago truncatula HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
PSO541G5257 Papaver somniferum HOM05D003042 ORTHO05D003670 7.4e-07 57.0 37 73.0
PSO675G4282 Papaver somniferum HOM05D003042 ORTHO05D003670 7.4e-07 57.0 37 73.0
Psat1g218040 Pisum sativum HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
RcHm_v2.0_Chr7g0225991 Rosa chinensis HOM05D003042 ORTHO05D003670 7.4e-07 57.0 27 88.9
SGA_v2.0_scaffold45G17302 Striga asiatica HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 77.4
THA.LOC104813581 Tarenaya hassleriana HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 80.6
HPP92_002339 Vanilla planifolia HOM05D003042 ORTHO05D003670 7.4e-07 57.0 31 77.4
arahy.Tifrunner.gnm1.ann1.KZIJ4I Arachis hypogaea HOM05D003042 ORTHO05D003670 9.7e-07 56.6 31 74.2
EL10Ac8g19347 Beta vulgaris HOM05D003042 ORTHO05D003670 9.7e-07 56.6 31 77.4
EL10Ac9g22228 Beta vulgaris HOM05D003042 ORTHO05D003670 9.7e-07 56.6 31 77.4
Cfa001896 Carpinus fangiana HOM05D003042 ORTHO05D003670 9.7e-07 56.6 31 77.4
Ciclev10025978m.g Citrus clementina HOM05D003042 ORTHO05D003670 9.7e-07 56.6 31 80.6
Cc02_g21810 Coffea canephora HOM05D003042 ORTHO05D003670 9.7e-07 56.6 31 77.4
Lj6g0022000 Lotus japonicus HOM05D003042 ORTHO05D003670 9.7e-07 56.6 31 77.4
Nitab4.5_0000078g0100 Nicotiana tabacum HOM05D003042 ORTHO05D003670 9.7e-07 56.6 31 77.4
Nitab4.5_0005663g0040 Nicotiana tabacum HOM05D003042 ORTHO05D003670 9.7e-07 56.6 31 77.4
PGR142G0215 Punica granatum HOM05D003042 ORTHO05D003670 9.7e-07 56.6 31 77.4
Sabra03G0131800 Salix brachista HOM05D003042 ORTHO05D003670 9.7e-07 56.6 31 77.4
Solyc10g047000.2 Solanum lycopersicum HOM05D003042 ORTHO05D003670 9.7e-07 56.6 31 77.4
Sopen10g016960 Solanum pennellii HOM05D003042 ORTHO05D003670 9.7e-07 56.6 31 77.4
Atru.chr10.2391 Acer truncatum HOM05D003042 ORTHO05D003670 1.3e-06 56.2 31 80.6
Actinidia00254 Actinidia chinensis HOM05D003042 ORTHO05D003670 1.3e-06 56.2 30 80.0
Haze_16644 Corylus avellana HOM05D003042 ORTHO05D003670 1.3e-06 56.2 30 80.0
HanXRQChr03g0067001 Helianthus annuus HOM05D003042 ORTHO05D003670 1.3e-06 56.2 31 80.6
RcHm_v2.0_Chr2g0115621 Rosa chinensis HOM05D003042 ORTHO05D003670 1.3e-06 56.2 28 85.7
Hund12671 Selenicereus undatus HOM05D003042 ORTHO05D003670 1.3e-06 56.2 31 77.4
SGA_v2.0_scaffold60G20842 Striga asiatica HOM05D003042 ORTHO05D003670 1.3e-06 56.2 27 88.9
vmacro01812 Vaccinium macrocarpon HOM05D003042 ORTHO05D003670 1.3e-06 56.2 31 77.4
Os08g0176800 Oryza sativa ssp. japonica HOM05D003042 ORTHO05D003670 1.7e-06 55.8 31 77.4
Zm00001eb412490 Zea mays HOM05D003042 ORTHO05D003670 1.7e-06 55.8 31 77.4
Dinv09049 Davidia involucrata HOM05D003042 ORTHO05D003670 2.2e-06 55.5 31 77.4
Eucgr.J03097 Eucalyptus grandis HOM05D003042 ORTHO05D003670 2.2e-06 55.5 31 77.4
Potri.001G048100 Populus trichocarpa HOM05D003042 ORTHO05D003670 2.2e-06 55.5 31 74.2
RcHm_v2.0_Chr7g0188071 Rosa chinensis HOM05D003042 ORTHO05D003670 2.2e-06 55.5 27 85.2
Sabra01G0033300 Salix brachista HOM05D003042 ORTHO05D003670 2.2e-06 55.5 31 74.2
SHI11255 Sapria himalayana HOM05D003042 ORTHO05D003670 2.2e-06 55.5 31 74.2
Thecc.02G142800 Theobroma cacao HOM05D003042 ORTHO05D003670 2.2e-06 55.5 31 77.4
unitig_748.g7493 Utricularia gibba HOM05D003042 ORTHO05D003670 2.2e-06 55.5 27 85.2
Haze_13447 Corylus avellana HOM05D003042 ORTHO05D003670 2.8e-06 55.1 31 74.2
ECA236G1689 Erigeron canadensis HOM05D003042 ORTHO05D003670 2.8e-06 55.1 27 88.9
Peaxi162Scf00003g03627 Petunia axillaris HOM05D003042 ORTHO05D003670 2.8e-06 55.1 31 77.4
SEGI_19708 Sequoiadendron giganteum HOM05D003042 ORTHO05D003670 2.8e-06 55.1 28 78.6
Sc14g0002700 Simmondsia chinensis HOM05D003042 ORTHO05D003670 2.8e-06 55.1 31 74.2
Ah.01g006780 Amaranthus hybridus HOM05D000263 ORTHO05D000213 3.7e-06 54.7 31 74.2
arahy.Tifrunner.gnm1.ann1.QL4S9I Arachis hypogaea HOM05D003042 ORTHO05D003670 3.7e-06 54.7 27 81.5
AUR62027381 Chenopodium quinoa HOM05D003042 ORTHO05D003670 3.7e-06 54.7 31 74.2
AUR62031295 Chenopodium quinoa HOM05D003042 ORTHO05D003670 3.7e-06 54.7 31 74.2
Eucgr.J03099 Eucalyptus grandis HOM05D003042 ORTHO05D003670 3.7e-06 54.7 31 77.4
Potri.003G180000 Populus trichocarpa HOM05D003042 ORTHO05D003670 3.7e-06 54.7 27 85.2
ATR0763G056 Amborella trichopoda HOM05D003042 ORTHO05D003670 4.8e-06 54.3 31 71.0
Glyma.02G124400 Glycine max HOM05D003042 ORTHO05D003670 4.8e-06 54.3 31 77.4
Os01g0635400 Oryza sativa ssp. japonica HOM05D003042 ORTHO05D003670 4.8e-06 54.3 31 77.4
TAR381G1117 Trochodendron aralioides HOM05D003042 ORTHO05D003670 4.8e-06 54.3 31 74.2
BcaB03g14405 Brassica carinata HOM05D033897 ORTHO05D032280 6.3e-06 53.9 31 77.4
C07p24150 Brassica napus HOM05D033897 ORTHO05D032280 6.3e-06 53.9 31 77.4
BolC7t42941H Brassica oleracea HOM05D033897 ORTHO05D032280 6.3e-06 53.9 31 77.4
Eucgr.I02689 Eucalyptus grandis HOM05D003042 ORTHO05D003670 6.3e-06 53.9 27 85.2
QL05p050602 Quercus lobata HOM05D000971 ORTHO05D024505 6.3e-06 53.9 27 88.9
Cpa.g.sc10.109 Carica papaya HOM05D003042 ORTHO05D003670 8.2e-06 53.5 27 81.5
Duzib248G0201 Durio zibethinus HOM05D003042 ORTHO05D003670 8.2e-06 53.5 30 76.7
Lj2g0012532 Lotus japonicus HOM05D003042 ORTHO05D003670 8.2e-06 53.5 31 74.2
QL11p019654 Quercus lobata HOM05D003042 ORTHO05D003670 8.2e-06 53.5 30 76.7


User provided reference genes

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