Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 4.7e-79 297.7 144 100.0
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 6.3e-76 287.3 144 95.1
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 1.2e-74 283.1 144 95.8
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 6.3e-68 260.8 143 90.2
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 1.4e-67 259.6 143 88.8
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 1.8e-67 259.2 143 89.5
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 1.8e-67 259.2 143 89.5
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 9.1e-67 256.9 144 87.5
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 2.7e-66 255.4 147 86.4
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 1.9e-64 249.2 147 85.7
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 4.7e-63 244.6 147 83.7
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 8.0e-63 243.8 147 80.3
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 1.2e-61 240.0 147 82.3
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 2.6e-61 238.8 144 81.2
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 1.6e-58 229.6 137 81.8
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 4.0e-54 214.9 140 71.4
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 6.8e-54 214.2 122 78.7
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 1.2e-53 213.4 143 73.4
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 2.6e-53 212.2 138 73.9
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 2.9e-52 208.8 141 70.2
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 6.4e-52 207.6 139 71.2
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 1.1e-51 206.8 116 79.3
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 1.1e-51 206.8 141 70.2
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 1.8e-51 206.1 114 77.2
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 2.4e-51 205.7 139 69.8
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 3.2e-51 205.3 141 70.2
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 5.4e-51 204.5 135 71.9
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 5.4e-51 204.5 116 78.4
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 2.7e-50 202.2 116 79.3
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 3.5e-50 201.8 141 69.5
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 3.5e-50 201.8 141 69.5
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 4.6e-50 201.4 117 76.9
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 6.0e-50 201.1 114 80.7
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 7.8e-50 200.7 124 75.0
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 7.8e-50 200.7 124 75.0
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 7.8e-50 200.7 124 75.0
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.0e-49 200.3 117 76.1
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.0e-49 200.3 117 76.1
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 1.0e-49 200.3 133 72.9
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 1.3e-49 199.9 147 66.0
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 2.3e-49 199.1 123 74.0
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 3.9e-49 198.4 141 68.1
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 3.9e-49 198.4 141 68.1
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 1.5e-48 196.4 134 70.9
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 1.9e-48 196.1 141 66.7
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 1.9e-48 196.1 117 76.1
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 1.9e-48 196.1 111 79.3
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 2.5e-48 195.7 142 67.6
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 5.6e-48 194.5 142 69.7
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 5.6e-48 194.5 107 81.3
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 9.5e-48 193.7 129 70.5
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 9.5e-48 193.7 124 71.8
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 1.6e-47 193.0 124 72.6
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 2.8e-47 192.2 136 67.6
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 3.6e-47 191.8 120 73.3
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 3.6e-47 191.8 126 73.0
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 4.7e-47 191.4 145 65.5
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 6.2e-47 191.0 143 66.4
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 6.2e-47 191.0 141 65.2
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 1.1e-46 190.3 120 73.3
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.1e-46 190.3 108 79.6
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 1.8e-46 189.5 117 74.4
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 2.3e-46 189.1 152 63.8
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 6.8e-46 187.6 141 66.7
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 8.9e-46 187.2 107 76.6
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 8.9e-46 187.2 134 65.7
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 1.2e-45 186.8 141 63.8
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 5.8e-45 184.5 107 76.6
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 1.7e-44 183.0 150 60.0
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 2.2e-44 182.6 135 64.4
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 2.9e-44 182.2 134 64.9
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 3.7e-44 181.8 107 75.7
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 6.4e-44 181.0 109 75.2
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 1.4e-43 179.9 107 73.8
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.9e-43 179.5 113 73.5
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 2.4e-43 179.1 126 67.5
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 3.2e-43 178.7 133 63.9
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 4.1e-43 178.3 147 60.5
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 5.4e-43 177.9 146 63.0
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 9.2e-43 177.2 153 60.8
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 1.2e-42 176.8 167 53.9
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 2.7e-42 175.6 120 65.8
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 3.5e-42 175.3 145 62.1
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 3.5e-42 175.3 149 59.1
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 6.0e-42 174.5 109 72.5
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 3.9e-41 171.8 111 71.2
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 5.0e-41 171.4 171 53.2
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 1.9e-40 169.5 111 68.5
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 7.3e-40 167.5 96 78.1
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 7.3e-40 167.5 96 79.2
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 9.5e-40 167.2 109 67.9
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 1.2e-39 166.8 110 66.4
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 1.6e-39 166.4 109 68.8
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 2.1e-39 166.0 162 55.6
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 3.6e-39 165.2 110 67.3
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 2.3e-38 162.5 140 59.3
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 3.4e-37 158.7 149 53.0
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 8.3e-36 154.1 143 55.2
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 1.1e-35 153.7 111 62.2
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 2.4e-35 152.5 111 58.6
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 4.1e-35 151.8 133 56.4
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 9.2e-35 150.6 137 55.5
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 1.2e-34 150.2 146 53.4
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 2.4e-30 136.0 122 51.6
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 4.9e-28 128.3 91 68.1
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 4.9e-28 128.3 124 46.0
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 1.9e-24 116.3 106 51.9
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 1.6e-23 113.2 88 64.8
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 5.2e-22 108.2 96 55.2
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 3.2e-19 99.0 82 58.5
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 7.1e-19 97.8 48 97.9
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 3.0e-17 92.4 114 42.1
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 2.5e-16 89.4 71 54.9
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 7.3e-16 87.8 48 83.3
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 4.8e-15 85.1 73 58.9
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 3.1e-14 82.4 50 76.0
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 5.8e-13 78.2 50 70.0
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 7.6e-13 77.8 48 72.9
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 1.3e-12 77.0 47 74.5
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 2.4e-11 72.8 48 68.8
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 7.1e-11 71.2 47 68.1
PRCOL_00001485 Prasinoderma coloniale HOM05D006465 ORTHO05D008207 1.5e-08 63.5 94 40.4
Cre07.g323050 Chlamydomonas reinhardtii HOM05D006465 ORTHO05D008207 1.9e-08 63.2 91 35.2


User provided reference genes

Program Settings