Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 7.3e-300 1033.1 520 100.0
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 8.7e-293 1009.6 520 97.7
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 8.7e-293 1009.6 511 99.0
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 9.6e-292 1006.1 520 97.1
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.4e-282 975.7 521 94.4
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 3.8e-280 967.6 519 94.0
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 2.1e-278 961.8 520 92.7
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.5e-278 961.1 520 92.3
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.3e-275 952.6 520 92.3
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 4.8e-275 950.7 521 92.5
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.6e-273 944.9 520 91.3
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.0e-260 902.1 537 85.1
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 5.5e-247 857.4 520 83.3
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 4.4e-244 847.8 522 83.5
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.7e-235 819.3 482 87.8
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 4.7e-230 801.2 499 85.2
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 1.2e-225 786.6 467 81.4
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.6e-225 786.2 520 78.8
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 3.5e-225 785.0 519 75.5
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 5.9e-225 784.3 480 80.0
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.9e-224 781.9 471 81.1
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 3.9e-224 781.6 499 78.0
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.5e-223 779.6 471 80.9
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.5e-223 779.6 516 76.0
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.9e-223 779.2 516 75.8
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 5.6e-223 777.7 476 79.8
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 5.6e-223 777.7 471 79.4
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 9.5e-223 776.9 460 81.1
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.6e-222 776.2 497 77.5
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 2.8e-222 775.4 506 76.3
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 3.6e-222 775.0 523 74.4
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 4.7e-222 774.6 469 79.7
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 8.0e-222 773.9 517 74.9
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 8.0e-222 773.9 510 76.7
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.0e-221 773.5 488 77.7
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.0e-221 773.5 474 79.3
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.4e-221 773.1 523 73.4
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.4e-221 773.1 470 80.6
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 2.3e-221 772.3 522 74.1
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.1e-221 771.9 519 73.2
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 5.2e-221 771.2 508 76.4
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 8.9e-221 770.4 522 74.3
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 8.9e-221 770.4 499 75.4
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 2.0e-220 769.2 508 74.6
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.0e-220 769.2 461 79.6
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 4.4e-220 768.1 511 74.6
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 5.8e-220 767.7 522 74.1
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 7.5e-220 767.3 519 74.0
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 9.8e-220 766.9 462 81.2
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 9.8e-220 766.9 510 74.7
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.3e-219 766.5 463 80.3
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.7e-219 766.1 459 79.7
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 2.9e-219 765.4 474 77.8
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 2.9e-219 765.4 537 71.9
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 3.7e-219 765.0 520 73.3
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.9e-219 764.6 513 74.3
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 6.4e-219 764.2 459 81.0
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 8.3e-219 763.8 517 73.9
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.1e-218 763.5 463 79.5
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.4e-218 763.1 459 80.8
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 2.4e-218 762.3 461 79.6
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 4.1e-218 761.5 515 74.4
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.6e-217 759.6 516 72.7
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.5e-217 758.4 459 78.9
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 6.0e-217 757.7 512 72.5
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 7.8e-217 757.3 459 78.6
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 7.8e-217 757.3 502 73.1
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.3e-216 756.5 495 73.9
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.3e-216 756.5 469 76.8
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.7e-216 756.1 516 73.8
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 3.9e-216 755.0 479 75.6
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 3.9e-216 755.0 509 72.9
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 5.0e-216 754.6 511 72.6
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 6.6e-216 754.2 518 72.6
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 6.6e-216 754.2 523 72.5
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.5e-215 753.1 466 78.8
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.9e-215 752.7 462 77.1
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 3.3e-215 751.9 487 74.1
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.2e-214 750.0 517 72.1
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.2e-214 750.0 537 71.3
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.2e-214 750.0 516 71.5
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 1.2e-214 750.0 463 77.8
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.6e-214 749.6 483 76.4
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.8e-214 748.8 493 74.4
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.6e-214 748.4 483 76.2
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 8.0e-214 747.3 508 74.4
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.4e-213 746.5 515 71.5
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.2e-213 744.6 541 69.7
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 5.2e-213 744.6 504 72.0
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.2e-212 743.4 534 69.7
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.0e-212 742.7 514 71.2
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.3e-211 740.0 460 77.6
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 2.2e-211 739.2 517 75.4
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 8.3e-211 737.3 482 74.9
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.1e-210 736.9 459 76.7
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.1e-210 736.9 567 67.4
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.4e-210 736.5 510 71.0
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 5.4e-210 734.6 511 71.8
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 3.5e-209 731.9 488 73.4
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 3.9e-208 728.4 548 67.2
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 1.1e-207 726.9 485 73.2
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 5.6e-207 724.5 473 81.4
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.6e-206 723.0 485 72.2
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 1.6e-206 723.0 461 76.6
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.1e-202 710.3 487 73.9
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 3.5e-201 705.3 518 69.3
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 3.0e-200 702.2 464 72.2
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 3.3e-199 698.7 463 72.1
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.1e-197 693.7 507 70.0
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 3.1e-197 692.2 465 69.9
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.0e-196 689.5 468 69.7
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.7e-195 686.4 460 72.4
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.7e-193 679.1 450 72.7
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 6.0e-193 677.9 410 78.5
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 7.3e-191 671.0 465 71.2
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 9.6e-191 670.6 478 67.8
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 8.1e-190 667.5 438 78.3
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.2e-188 663.7 448 75.9
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 4.9e-187 658.3 441 76.9
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.4e-186 656.8 458 70.5
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 4.6e-185 651.7 520 66.3
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 2.3e-184 649.4 431 72.4
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.2e-177 627.1 453 66.4
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.1e-177 626.3 373 78.8
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.5e-175 620.2 373 77.5
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 2.1e-174 616.3 392 78.6
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 8.7e-168 594.3 712 47.2
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 2.8e-158 562.8 341 82.4
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 2.4e-157 559.7 385 78.4
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.8e-150 536.2 392 70.7
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 4.3e-114 416.0 258 84.1
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 5.6e-114 415.6 312 69.9
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 3.5e-108 396.4 237 79.3
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 3.3e-98 363.2 292 61.3
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 8.1e-97 358.6 453 41.5
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 2.1e-89 334.0 453 39.5
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.2e-87 328.2 464 39.0
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 7.1e-85 318.9 201 76.6
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.1e-76 290.8 228 64.5
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 2.2e-62 244.2 165 77.6
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.4e-61 241.5 134 90.3
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.7e-60 237.3 400 38.2
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.8e-59 234.6 249 55.4
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 3.0e-59 233.8 131 83.2
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 5.8e-55 219.5 192 62.0
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.6e-52 211.5 170 60.0
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.6e-49 201.4 196 54.6
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.0e-43 182.2 122 63.1
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.3e-43 181.8 373 31.6
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.6e-41 174.9 98 84.7
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 2.2e-38 164.5 91 85.7
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.8e-35 154.8 93 87.1
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 3.9e-35 153.7 122 60.7
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 5.7e-34 149.8 74 95.9
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.7e-30 138.3 80 77.5
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 3.2e-29 134.0 293 29.7
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 1.1e-26 125.6 100 63.0
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.4e-26 123.6 130 41.5
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 2.8e-25 120.9 100 61.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 7.0e-24 116.3 60 91.7
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 8.8e-11 72.8 47 70.2
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 8.8e-11 72.8 43 74.4
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 2.6e-10 71.2 41 75.6
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 1.3e-09 68.9 107 45.8
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 5.9e-07 60.1 35 77.1
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 2.2e-06 58.2 38 71.1
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 8.5e-06 56.2 48 60.4


User provided reference genes

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