Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 2.4e-139 498.8 253 100.0
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 2.4e-139 498.8 253 100.0
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 9.5e-136 486.9 256 97.7
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 2.8e-135 485.3 256 96.5
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 2.8e-135 485.3 256 97.3
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 1.3e-129 466.5 255 93.3
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 1.9e-128 462.6 256 91.8
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 5.6e-128 461.1 256 92.2
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 1.6e-127 459.5 255 92.9
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 6.2e-127 457.6 256 91.4
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 2.4e-126 455.7 256 91.0
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 1.9e-123 446.0 253 90.5
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 1.2e-122 443.4 240 95.8
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 3.3e-120 435.3 251 90.0
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 6.9e-118 427.6 256 85.5
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 3.7e-111 405.2 260 78.8
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 1.2e-109 400.2 257 79.4
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 1.7e-108 396.4 256 79.3
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 4.2e-107 391.7 251 75.3
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 9.3e-107 390.6 251 75.3
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 1.2e-106 390.2 251 74.9
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 2.3e-105 386.0 251 77.3
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 2.3e-105 386.0 253 77.1
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 3.9e-105 385.2 255 75.3
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 9.6e-104 380.6 256 75.8
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 6.2e-103 377.9 254 76.4
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 6.2e-103 377.9 255 76.1
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 8.2e-103 377.5 253 74.7
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 1.1e-102 377.1 254 75.2
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 2.4e-102 375.9 253 74.7
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 2.6e-101 372.5 249 74.3
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 2.6e-101 372.5 249 74.3
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 4.5e-101 371.7 253 72.7
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 7.6e-101 370.9 205 92.7
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 1.0e-100 370.5 255 74.1
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 3.8e-100 368.6 251 72.9
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 4.9e-100 368.2 251 74.1
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 4.9e-100 368.2 250 74.8
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.1e-99 367.1 255 75.3
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 1.1e-99 367.1 255 72.9
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 2.5e-99 365.9 256 72.3
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 7.1e-99 364.4 252 73.4
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 2.1e-98 362.8 251 72.1
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 2.7e-98 362.5 252 74.6
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 3.5e-98 362.1 255 72.9
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 2.3e-97 359.4 250 74.0
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 2.3e-97 359.4 253 71.1
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 2.3e-97 359.4 253 71.5
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 2.3e-97 359.4 253 73.1
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 3.0e-97 359.0 253 73.5
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 3.9e-97 358.6 255 70.6
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 3.9e-97 358.6 251 71.7
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 5.1e-97 358.2 257 73.2
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 1.1e-96 357.1 253 71.9
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 1.1e-96 357.1 249 72.7
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 1.9e-96 356.3 272 69.5
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 7.4e-96 354.4 251 71.3
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 1.3e-95 353.6 252 69.8
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 1.6e-95 353.2 253 72.3
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 2.1e-95 352.8 251 69.7
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 4.8e-95 351.7 252 70.6
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 4.8e-95 351.7 250 71.2
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 8.2e-95 350.9 253 70.0
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.4e-94 350.1 250 70.8
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 2.4e-94 349.4 253 69.6
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 3.1e-94 349.0 270 69.6
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 4.1e-94 348.6 255 71.0
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 4.1e-94 348.6 257 72.0
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 5.3e-94 348.2 257 69.6
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 6.9e-94 347.8 252 69.8
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 9.0e-94 347.4 257 70.8
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 9.0e-94 347.4 257 70.4
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 9.0e-94 347.4 266 69.2
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 3.4e-93 345.5 257 70.4
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 3.4e-93 345.5 253 68.8
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 5.9e-93 344.7 249 71.1
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 5.9e-93 344.7 253 68.8
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 5.9e-93 344.7 253 68.8
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 1.0e-92 344.0 257 70.0
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 1.7e-92 343.2 258 69.8
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 3.8e-92 342.0 253 70.0
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 3.8e-92 342.0 252 68.7
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 4.2e-91 338.6 251 68.1
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 7.2e-91 337.8 238 68.9
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 2.1e-90 336.3 254 68.1
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 2.1e-90 336.3 302 61.6
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 2.3e-89 332.8 238 69.3
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 3.0e-89 332.4 276 63.4
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 5.1e-89 331.6 263 65.0
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 5.1e-89 331.6 253 65.6
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 2.5e-88 329.3 257 73.2
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 3.3e-88 328.9 237 69.2
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 4.3e-88 328.6 259 64.1
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 4.8e-87 325.1 259 63.7
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 1.4e-86 323.6 236 71.2
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 9.1e-86 320.9 256 66.4
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 2.9e-84 315.8 252 61.1
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 4.2e-83 312.0 239 67.8
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 1.6e-82 310.1 254 61.4
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 4.6e-82 308.5 253 62.1
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 2.2e-79 299.7 255 61.6
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 1.1e-78 297.4 256 59.8
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.5e-76 288.1 167 81.4
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 6.5e-76 288.1 254 58.3
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.4e-75 287.0 201 70.6
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 5.5e-75 285.0 257 57.6
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 4.7e-74 282.0 206 70.9
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 9.7e-72 274.2 164 79.3
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 4.1e-70 268.9 260 58.8
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 1.2e-69 267.3 235 60.9
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 3.2e-67 259.2 176 73.9
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 4.7e-66 255.4 167 78.4
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 1.4e-65 253.8 185 68.6
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 8.8e-65 251.1 243 54.3
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 8.8e-65 251.1 192 65.6
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 7.0e-62 241.5 250 52.4
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 2.9e-60 236.1 218 57.8
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 4.7e-58 228.8 222 55.9
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 1.8e-57 226.9 253 50.2
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 1.8e-49 200.3 115 82.6
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 3.8e-44 182.6 101 81.2
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 7.3e-43 178.3 144 66.7
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 3.6e-42 176.0 262 40.8
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 4.4e-40 169.1 140 65.7
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 4.9e-39 165.6 147 58.5
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 6.8e-33 145.2 68 98.5
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 7.3e-27 125.2 93 65.6
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 2.8e-26 123.2 117 53.8
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 3.7e-23 112.8 57 87.7
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 4.3e-19 99.4 72 62.5
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 2.0e-16 90.5 72 69.4
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 1.3e-15 87.8 65 67.7
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 3.8e-15 86.3 78 61.5
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 6.6e-12 75.5 69 56.5
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-11 73.9 60 68.3
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 5.6e-11 72.4 73 57.5
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 1.2e-08 64.7 63 54.0
MBI07_g43742_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 1.4e-06 57.8 116 40.5


User provided reference genes

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