Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p33570 Brassica napus HOM05D004148 ORTHO05D004709 4.2e-44 181.0 96 100.0
A10p16420 Brassica napus HOM05D004148 ORTHO05D004709 4.2e-44 181.0 96 100.0
C06p15540 Brassica napus HOM05D004148 ORTHO05D004709 4.2e-44 181.0 96 100.0
C08p23060 Brassica napus HOM05D004148 ORTHO05D004709 4.2e-44 181.0 96 100.0
A08p03240 Brassica napus HOM05D004148 ORTHO05D004709 1.4e-42 176.0 96 97.9
A08p06640 Brassica napus HOM05D004148 ORTHO05D004709 2.4e-31 138.7 112 74.1
BraA07t28462Z Brassica rapa HOM05D004148 ORTHO05D004709 2.4e-31 138.7 112 74.1
BolC8t48007H Brassica oleracea HOM05D004148 ORTHO05D004709 6.6e-29 130.6 113 70.8
C05p34090 Brassica napus HOM05D004148 ORTHO05D004709 1.5e-28 129.4 112 69.6
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 6.8e-26 120.6 110 69.1
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 1.3e-24 116.3 110 67.3
BolSC21t60233H Brassica oleracea HOM05D004148 ORTHO05D004709 1.3e-24 116.3 110 67.3
BraA05t21194Z Brassica rapa HOM05D004148 ORTHO05D004709 1.1e-23 113.2 112 66.1
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 1.4e-23 112.8 109 65.1
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 1.4e-23 112.8 109 65.1
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 1.9e-23 112.5 114 63.2
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 7.1e-23 110.5 111 63.1
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 7.1e-23 110.5 109 64.2
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 1.6e-22 109.4 110 61.8
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 6.0e-22 107.5 110 61.8
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 2.3e-21 105.5 112 59.8
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 2.3e-21 105.5 112 60.7
Carub.0005s0934 Capsella rubella HOM05D004148 ORTHO05D004709 3.0e-21 105.1 110 60.9
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 3.0e-21 105.1 110 60.9
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 5.1e-21 104.4 109 62.4
A05p23300 Brassica napus HOM05D004148 ORTHO05D004709 5.1e-21 104.4 116 58.6
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 1.8e-18 95.9 81 65.4
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 2.0e-17 92.4 110 56.4
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 3.7e-16 88.2 106 50.9
Cpa.g.sc103.97 Carica papaya HOM05D004148 ORTHO05D004709 3.2e-15 85.1 111 52.3
COL.COLO4_25330 Corchorus olitorius HOM05D004148 ORTHO05D004709 3.2e-15 85.1 108 50.9
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 4.1e-15 84.7 110 52.7
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 5.4e-15 84.3 102 52.9
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 7.1e-15 84.0 112 51.8
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 1.2e-14 83.2 117 49.6
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 3.5e-14 81.6 106 47.2
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 6.0e-14 80.9 111 48.6
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 6.0e-14 80.9 115 45.2
Haze_23628 Corylus avellana HOM05D004148 ORTHO05D004709 7.8e-14 80.5 107 50.5
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 1.0e-13 80.1 109 47.7
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 1.0e-13 80.1 106 49.1
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 1.3e-13 79.7 112 46.4
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 3.0e-13 78.6 82 52.4
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 3.0e-13 78.6 109 45.0
Eucgr.B03795 Eucalyptus grandis HOM05D004148 ORTHO05D004709 5.1e-13 77.8 113 46.0
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 8.6e-13 77.0 107 49.5
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 1.1e-12 76.6 109 47.7
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 1.1e-12 76.6 116 43.1
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 1.5e-12 76.3 112 45.5
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.5e-12 76.3 103 48.5
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 1.9e-12 75.9 83 50.6
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 1.9e-12 75.9 103 48.5
CSS0039701 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 2.5e-12 75.5 114 44.7
CSS0039756 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 2.5e-12 75.5 114 44.7
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 2.5e-12 75.5 102 46.1
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.5e-12 75.5 103 47.6
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 4.3e-12 74.7 102 49.0
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 5.6e-12 74.3 114 43.9
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 5.6e-12 74.3 113 45.1
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 5.6e-12 74.3 106 48.1
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 5.6e-12 74.3 102 50.0
arahy.Tifrunner.gnm1.ann1.SF9HJV Arachis hypogaea HOM05D004148 ORTHO05D004709 7.3e-12 73.9 103 41.7
MD03G1162400 Malus domestica HOM05D004148 ORTHO05D004709 7.3e-12 73.9 105 46.7
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 9.6e-12 73.6 107 44.9
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.2e-11 73.2 103 47.6
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 1.6e-11 72.8 103 49.5
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 2.1e-11 72.4 113 45.1
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 2.1e-11 72.4 103 48.5
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 2.1e-11 72.4 111 44.1
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 2.1e-11 72.4 111 44.1
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 4.7e-11 71.2 108 42.6
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 4.7e-11 71.2 59 61.0
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 6.2e-11 70.9 110 42.7
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 1.1e-10 70.1 105 41.9
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 1.8e-10 69.3 107 43.0
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 1.8e-10 69.3 108 39.8
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 2.4e-10 68.9 116 37.1
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 5.2e-10 67.8 113 42.5
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 8.9e-10 67.0 114 43.0
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 1.5e-09 66.2 111 43.2
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 1.5e-09 66.2 78 48.7
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 2.0e-09 65.9 62 58.1
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 3.4e-09 65.1 110 40.0
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 3.4e-09 65.1 76 52.6
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 3.4e-09 65.1 62 58.1
DCAR_012264 Daucus carota HOM05D000495 ORTHO05D000357 4.4e-09 64.7 69 52.2
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 4.4e-09 64.7 62 56.5
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 1.3e-08 63.2 62 48.4
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 1.7e-08 62.8 74 51.4
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 1.7e-08 62.8 112 39.3
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 1.7e-08 62.8 115 40.9
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 2.2e-08 62.4 114 40.4
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 2.2e-08 62.4 111 36.0
HPP92_019532 Vanilla planifolia HOM05D004148 ORTHO05D004709 6.4e-08 60.8 111 38.7
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 8.4e-08 60.5 111 42.3
A06p05890 Brassica napus HOM05D004148 ORTHO05D004709 1.1e-07 60.1 45 71.1
vmacro04063 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 1.1e-07 60.1 78 47.4
SHI25296 Sapria himalayana HOM05D004148 ORTHO05D004709 1.4e-07 59.7 60 56.7
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 9.3e-07 57.0 139 34.5
unitig_21.g20312 Utricularia gibba HOM05D004148 ORTHO05D004709 1.6e-06 56.2 59 52.5
Os04g0566900 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 2.1e-06 55.8 56 51.8
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 4.6e-06 54.7 108 33.3


User provided reference genes

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