Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 2.3e-94 349.4 242 100.0
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 9.9e-90 334.0 262 92.0
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 8.4e-89 330.9 243 97.5
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 8.4e-89 330.9 243 97.5
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 7.1e-88 327.8 243 97.1
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 1.5e-82 310.1 242 93.4
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 3.3e-77 292.4 244 90.6
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 4.3e-77 292.0 244 91.0
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 1.3e-70 270.4 244 86.5
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 2.5e-69 266.2 242 85.5
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 1.3e-68 263.8 244 85.2
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 1.1e-67 260.8 242 85.1
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 1.4e-51 207.2 243 73.3
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 2.0e-50 203.4 244 71.7
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 3.4e-50 202.6 245 71.8
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 5.9e-50 201.8 245 71.0
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 6.5e-49 198.4 245 67.8
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 8.5e-49 198.0 243 69.5
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 1.9e-48 196.8 245 69.4
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 1.9e-48 196.8 243 68.7
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 2.5e-48 196.4 243 67.9
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 9.4e-48 194.5 245 66.5
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.6e-47 192.6 243 68.3
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 6.1e-47 191.8 241 68.9
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 1.0e-46 191.0 201 77.6
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 1.4e-46 190.7 230 70.4
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 1.4e-46 190.7 211 76.8
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 1.8e-46 190.3 237 70.5
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 2.3e-46 189.9 167 95.2
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 2.3e-46 189.9 208 76.9
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.3e-46 189.9 208 76.9
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 3.0e-46 189.5 243 68.7
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 3.9e-46 189.1 200 78.5
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 5.1e-46 188.7 239 68.2
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 5.1e-46 188.7 243 68.3
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 6.7e-46 188.3 240 68.8
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 8.8e-46 188.0 242 68.6
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 8.8e-46 188.0 216 72.2
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 1.5e-45 187.2 243 67.5
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 1.5e-45 187.2 244 67.6
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 1.5e-45 187.2 249 66.7
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 1.5e-45 187.2 243 68.3
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 2.0e-45 186.8 194 79.4
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 3.3e-45 186.0 208 74.5
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.3e-45 186.0 208 76.4
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 4.3e-45 185.7 186 81.7
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 5.7e-45 185.3 186 81.7
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 5.7e-45 185.3 243 66.7
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 5.7e-45 185.3 184 82.6
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 7.4e-45 184.9 227 73.1
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 7.4e-45 184.9 245 68.6
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 9.7e-45 184.5 205 76.1
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 9.7e-45 184.5 224 73.2
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 9.7e-45 184.5 240 67.5
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 1.3e-44 184.1 185 77.8
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 1.3e-44 184.1 243 67.5
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 1.3e-44 184.1 208 74.5
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.7e-44 183.7 233 69.1
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 2.2e-44 183.3 242 66.9
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 2.2e-44 183.3 240 67.1
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 2.8e-44 183.0 244 67.6
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 3.7e-44 182.6 245 66.1
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 3.7e-44 182.6 243 67.9
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 8.2e-44 181.4 239 70.3
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 8.2e-44 181.4 199 76.4
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 1.1e-43 181.0 246 67.5
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 1.4e-43 180.6 255 56.9
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 1.4e-43 180.6 267 49.8
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 1.8e-43 180.3 237 67.1
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 3.1e-43 179.5 233 67.4
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.1e-43 179.1 259 44.4
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 4.1e-43 179.1 249 65.5
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 5.3e-43 178.7 180 83.9
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 6.9e-43 178.3 245 66.9
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 6.9e-43 178.3 248 63.7
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 9.1e-43 177.9 242 68.6
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 9.1e-43 177.9 208 74.0
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 1.5e-42 177.2 242 68.6
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 1.5e-42 177.2 190 80.0
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 2.6e-42 176.4 246 68.3
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 3.4e-42 176.0 227 67.8
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 4.5e-42 175.6 185 80.5
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 5.9e-42 175.3 210 71.4
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 1.0e-41 174.5 183 78.7
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 1.3e-41 174.1 245 66.1
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 1.7e-41 173.7 243 67.1
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 1.7e-41 173.7 185 80.0
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 1.7e-41 173.7 209 75.6
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 1.7e-41 173.7 184 78.8
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 2.2e-41 173.3 222 71.2
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 2.9e-41 172.9 184 80.4
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.8e-41 172.6 186 62.4
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 5.0e-41 172.2 243 65.4
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 5.0e-41 172.2 185 79.5
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 8.5e-41 171.4 186 78.5
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.9e-40 170.2 243 63.8
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 1.9e-40 170.2 142 61.3
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 5.5e-40 168.7 186 80.6
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 9.4e-40 167.9 243 63.0
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 9.4e-40 167.9 235 63.4
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 2.7e-39 166.4 148 59.5
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.7e-39 166.4 259 42.5
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 3.6e-39 166.0 243 64.2
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 6.1e-39 165.2 243 53.9
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 1.4e-38 164.1 237 65.4
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.1e-38 162.2 157 88.5
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.7e-38 161.8 169 83.4
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 2.8e-36 156.4 234 62.8
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 3.7e-36 156.0 98 77.6
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.0e-35 151.8 98 75.5
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.0e-35 151.8 98 75.5
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.0e-35 151.8 98 75.5
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-34 151.0 124 63.7
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.6e-34 150.6 98 74.5
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.7e-34 148.3 98 74.5
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.3e-33 147.5 98 73.5
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 1.3e-33 147.5 246 59.3
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.7e-33 147.1 243 61.3
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.1e-32 144.4 209 45.5
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.1e-32 144.4 209 45.5
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.2e-32 141.7 182 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 1.6e-31 140.6 125 60.8
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 3.3e-29 132.9 156 78.2
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.2e-28 128.3 182 47.8
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.4e-27 127.5 72 83.3
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 1.8e-27 127.1 97 66.0
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 2.0e-21 107.1 186 65.6
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 5.0e-17 92.4 59 67.8
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 2.9e-09 66.6 115 76.5
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 3.8e-09 66.2 117 38.5


User provided reference genes

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