Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p04300 Brassica napus HOM05D000875 ORTHO05D000684 4.0e-93 344.7 175 100.0
BcaC05g24362 Brassica carinata HOM05D000875 ORTHO05D000684 4.2e-50 201.8 100 97.0
C05p03940 Brassica napus HOM05D000875 ORTHO05D000684 4.2e-50 201.8 100 97.0
BolC5t29172H Brassica oleracea HOM05D000875 ORTHO05D000684 4.2e-50 201.8 113 87.6
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 1.7e-46 189.9 112 83.0
Sp1g04420 Schrenkiella parvula HOM05D000875 ORTHO05D000684 2.2e-38 162.9 113 71.7
AT1G05577 Arabidopsis thaliana HOM05D000875 ORTHO05D000684 2.9e-38 162.5 115 69.6
AL1G15460 Arabidopsis lyrata HOM05D000875 ORTHO05D000684 8.3e-38 161.0 115 71.3
BcaB02g06839 Brassica carinata HOM05D000875 ORTHO05D000684 1.6e-36 156.8 115 70.4
Thhalv10009387m.g Eutrema salsugineum HOM05D000875 ORTHO05D000684 1.1e-34 150.6 115 67.8
A09p67400 Brassica napus HOM05D000875 ORTHO05D000684 3.3e-34 149.1 106 68.9
BcaC07g42128 Brassica carinata HOM05D000875 ORTHO05D000684 7.3e-34 147.9 106 67.9
C08p51690 Brassica napus HOM05D000875 ORTHO05D000684 7.3e-34 147.9 106 67.9
BolC8t52697H Brassica oleracea HOM05D000875 ORTHO05D000684 7.3e-34 147.9 106 67.9
BraA09t42069Z Brassica rapa HOM05D000875 ORTHO05D000684 1.2e-33 147.1 106 67.9
CARHR005070 Cardamine hirsuta HOM05D000875 ORTHO05D000684 2.3e-32 142.9 98 70.4
THA.LOC104801546 Tarenaya hassleriana HOM05D000875 ORTHO05D000684 3.6e-17 92.4 62 67.7
A10p04340 Brassica napus HOM05D000875 ORTHO05D000684 1.7e-14 83.6 95 50.5
BcaC02g11469 Brassica carinata HOM05D001720 ORTHO05D001813 9.2e-13 77.8 70 64.3
A05p11530 Brassica napus HOM05D001720 ORTHO05D001813 1.6e-12 77.0 70 65.7
C04p15000 Brassica napus HOM05D001720 ORTHO05D001813 3.5e-12 75.9 70 64.3
BraA05t20100Z Brassica rapa HOM05D001720 ORTHO05D001813 4.6e-12 75.5 70 64.3
BcaC02g11471 Brassica carinata HOM05D001720 ORTHO05D001813 1.7e-11 73.6 70 62.9
BolC4t23074H Brassica oleracea HOM05D001720 ORTHO05D001813 1.7e-11 73.6 70 62.9
Thhalv10016256m.g Eutrema salsugineum HOM05D001720 ORTHO05D001813 2.3e-11 73.2 70 61.4
Atru.chr11.2717 Acer truncatum HOM05D000875 ORTHO05D000684 1.2e-09 67.4 104 42.3
CARHR128240 Cardamine hirsuta HOM05D001720 ORTHO05D001813 2.1e-09 66.6 66 63.6
Carub.0004s1578 Capsella rubella HOM05D001720 ORTHO05D001813 2.8e-09 66.2 53 71.7
Sp4g16460 Schrenkiella parvula HOM05D001720 ORTHO05D001813 4.7e-09 65.5 53 69.8
Hma1.2p1_0128F.1_g059880 Hydrangea macrophylla HOM05D000875 ORTHO05D000684 6.2e-09 65.1 61 55.7
AT2G34150 Arabidopsis thaliana HOM05D001720 ORTHO05D001813 8.1e-09 64.7 53 69.8
AL4G30050 Arabidopsis lyrata HOM05D001720 ORTHO05D001813 1.1e-08 64.3 53 69.8
Potri.001G232300 Populus trichocarpa HOM05D000875 ORTHO05D000684 1.8e-08 63.5 75 46.7
Carub.0001s0490 Capsella rubella HOM05D000875 ORTHO05D000684 8.9e-08 61.2 52 59.6
Glyma.08G159000 Glycine max HOM05D000875 ORTHO05D000684 2.0e-07 60.1 59 55.9
Prupe.2G001400 Prunus persica HOM05D000875 ORTHO05D000684 2.6e-07 59.7 66 51.5
QL04p002024 Quercus lobata HOM05D000875 ORTHO05D000684 3.4e-07 59.3 61 52.5
Solyc01g081630.4 Solanum lycopersicum HOM05D000875 ORTHO05D000684 3.4e-07 59.3 60 50.0
PGSC0003DMG400031117 Solanum tuberosum HOM05D000875 ORTHO05D000684 3.4e-07 59.3 63 52.4
GSVIVG01005997001 Vitis vinifera HOM05D000875 ORTHO05D000684 3.4e-07 59.3 60 53.3
Cc02_g26760 Coffea canephora HOM05D000875 ORTHO05D000684 4.4e-07 58.9 60 53.3
PGR031G3670 Punica granatum HOM05D000875 ORTHO05D000684 4.4e-07 58.9 68 50.0
Carub.0001s2737 Capsella rubella HOM05D001720 ORTHO05D001813 5.8e-07 58.5 53 62.3
CAN.G1361.9 Capsicum annuum HOM05D000875 ORTHO05D000684 5.8e-07 58.5 59 50.8
MD07G1001300 Malus domestica HOM05D000875 ORTHO05D000684 7.6e-07 58.2 62 50.0
Sopen01g033180 Solanum pennellii HOM05D000875 ORTHO05D000684 7.6e-07 58.2 63 50.8
AL1G42880 Arabidopsis lyrata HOM05D001720 ORTHO05D001813 9.9e-07 57.8 53 64.2
Dinv43948 Davidia involucrata HOM05D000875 ORTHO05D000684 9.9e-07 57.8 60 53.3
Thhalv10006666m.g Eutrema salsugineum HOM05D001720 ORTHO05D001813 1.3e-06 57.4 53 66.0
VMungo1080G1227 Vigna mungo HOM05D000875 ORTHO05D000684 1.3e-06 57.4 59 52.5
CiPaw.14G094500 Carya illinoinensis HOM05D000875 ORTHO05D000684 1.7e-06 57.0 44 68.2
Dinv43507 Davidia involucrata HOM05D000875 ORTHO05D000684 2.2e-06 56.6 39 69.2
Manes.10G153300 Manihot esculenta HOM05D000875 ORTHO05D000684 2.2e-06 56.6 73 43.8
Potri.009G024900 Populus trichocarpa HOM05D000875 ORTHO05D000684 2.9e-06 56.2 61 50.8
Psat1g129480 Pisum sativum HOM05D000875 ORTHO05D000684 3.8e-06 55.8 58 53.4
Phvul.005G042900 Phaseolus vulgaris HOM05D000875 ORTHO05D000684 4.9e-06 55.5 59 50.8
Sabra09G0016500 Salix brachista HOM05D000875 ORTHO05D000684 4.9e-06 55.5 43 62.8
TPR.G16144 Trifolium pratense HOM05D000875 ORTHO05D000684 4.9e-06 55.5 34 76.5
Medtr2g062310 Medicago truncatula HOM05D000875 ORTHO05D000684 6.4e-06 55.1 33 75.8
SalBow5G2497 Salvia bowleyana HOM05D000875 ORTHO05D000684 6.4e-06 55.1 70 48.6
TAR633G0980 Trochodendron aralioides HOM05D000875 ORTHO05D000684 6.4e-06 55.1 69 49.3
CARHR028480 Cardamine hirsuta HOM05D001720 ORTHO05D001813 8.4e-06 54.7 53 62.3


User provided reference genes

Program Settings