Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 4.3e-275 950.7 471 100.0
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 4.3e-275 950.7 471 100.0
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 1.2e-261 906.0 455 98.2
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 1.0e-252 876.3 471 93.0
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 1.5e-243 845.9 460 93.0
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 6.1e-237 823.9 409 98.8
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 2.4e-233 812.0 411 97.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 7.0e-233 810.4 410 97.1
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 7.0e-233 810.4 410 97.3
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 9.2e-233 810.1 409 96.8
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.2e-232 809.7 409 96.3
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 5.9e-232 807.4 409 96.3
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 5.9e-232 807.4 409 96.6
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 1.0e-231 806.6 409 96.3
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 7.8e-224 780.4 409 92.2
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 2.8e-221 771.9 411 93.9
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 1.9e-217 759.2 409 89.0
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 6.6e-215 750.7 406 88.4
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 6.6e-215 750.7 410 88.3
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 1.1e-214 750.0 409 88.3
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.1e-214 750.0 409 87.8
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 1.5e-214 749.6 407 87.0
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 7.3e-214 747.3 410 88.3
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 1.2e-213 746.5 409 88.0
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 8.1e-213 743.8 409 86.3
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 8.1e-213 743.8 407 87.0
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 1.1e-212 743.4 407 88.5
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.1e-212 743.4 409 86.8
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.4e-212 743.0 409 86.6
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 1.4e-212 743.0 409 87.0
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 1.8e-212 742.7 406 88.4
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.8e-212 742.7 409 86.3
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.8e-212 742.7 406 88.2
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.8e-212 742.7 407 87.0
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.3e-212 742.3 409 86.3
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.3e-212 742.3 409 87.0
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 3.1e-212 741.9 406 87.9
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 4.0e-212 741.5 409 87.5
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 4.0e-212 741.5 409 86.1
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.0e-212 741.5 406 88.2
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 4.0e-212 741.5 408 87.0
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 4.0e-212 741.5 408 86.5
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 5.2e-212 741.1 406 88.4
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 6.8e-212 740.7 409 87.0
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 8.9e-212 740.3 407 86.7
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 8.9e-212 740.3 409 85.8
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.2e-211 740.0 410 87.6
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.2e-211 740.0 408 86.3
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 1.2e-211 740.0 409 86.6
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.5e-211 739.6 410 87.3
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 2.0e-211 739.2 409 87.3
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.0e-211 739.2 406 87.9
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.0e-211 739.2 409 87.0
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.0e-211 739.2 409 87.0
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 3.4e-211 738.4 421 85.0
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 3.4e-211 738.4 407 86.5
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 5.8e-211 737.6 406 87.2
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 5.8e-211 737.6 409 87.3
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 7.5e-211 737.3 409 86.3
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 7.5e-211 737.3 409 87.0
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 9.9e-211 736.9 425 84.7
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.3e-210 736.5 409 86.3
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 1.3e-210 736.5 411 87.3
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.7e-210 736.1 409 87.0
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.2e-210 735.7 409 85.8
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.2e-210 735.7 409 86.1
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 2.9e-210 735.3 409 85.3
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 3.7e-210 734.9 409 86.1
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.7e-210 734.9 406 87.4
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 4.9e-210 734.6 410 85.9
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 4.9e-210 734.6 407 85.7
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 8.3e-210 733.8 407 85.7
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.1e-209 733.4 407 87.5
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.4e-209 733.0 409 85.8
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.4e-209 733.0 406 87.4
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.9e-209 732.6 410 85.9
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.4e-209 732.3 409 85.6
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 4.1e-209 731.5 408 85.5
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 7.1e-209 730.7 409 84.8
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 9.2e-209 730.3 409 84.8
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 1.6e-208 729.6 410 85.9
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 2.1e-208 729.2 409 85.6
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.1e-208 729.2 452 79.4
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.7e-208 728.8 409 85.1
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 4.6e-208 728.0 409 86.3
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 4.6e-208 728.0 409 85.1
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 6.0e-208 727.6 436 82.1
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.7e-207 726.1 409 84.8
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 1.7e-207 726.1 413 84.5
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 2.3e-207 725.7 407 85.3
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 5.1e-207 724.5 358 98.3
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 8.6e-207 723.8 409 85.6
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 1.9e-206 722.6 409 83.4
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.9e-206 722.6 451 79.4
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 2.5e-206 722.2 410 83.9
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 3.3e-206 721.8 409 84.4
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 3.3e-206 721.8 409 85.6
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 3.3e-206 721.8 410 83.9
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 5.6e-206 721.1 409 84.6
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 5.6e-206 721.1 409 85.3
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 2.8e-205 718.8 409 82.4
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 2.8e-205 718.8 400 87.0
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.8e-205 718.8 406 85.0
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 3.6e-205 718.4 409 84.6
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.6e-205 718.4 409 84.1
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 4.7e-205 718.0 409 84.1
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 6.2e-205 717.6 476 75.8
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 7.6e-203 710.7 405 82.7
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 2.9e-202 708.8 410 83.9
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 6.4e-202 707.6 410 83.7
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.1e-201 706.8 405 83.2
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.0e-199 700.3 383 88.5
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 4.3e-198 694.9 452 74.8
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 5.6e-198 694.5 380 87.9
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 9.6e-198 693.7 388 86.6
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 1.8e-196 689.5 520 68.5
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 2.2e-194 682.6 385 84.7
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 9.3e-193 677.2 413 79.2
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 2.1e-192 676.0 358 89.9
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 2.1e-189 666.0 415 78.3
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 3.6e-189 665.2 356 89.3
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 3.4e-187 658.7 402 79.9
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 1.4e-185 653.3 401 78.3
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.9e-185 652.9 408 76.2
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 1.1e-180 637.1 409 78.0
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 7.9e-176 620.9 437 75.3
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 2.3e-175 619.4 405 72.1
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 8.7e-175 617.5 404 72.8
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 3.3e-174 615.5 406 73.9
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 1.6e-168 596.7 382 72.8
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 7.9e-168 594.3 322 86.6
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 1.9e-161 573.2 376 72.1
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 2.1e-152 543.1 387 70.3
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.4e-145 520.4 345 74.5
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.2e-139 500.7 309 79.3
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.7e-138 496.9 400 62.2
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 5.5e-129 465.3 245 90.6
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 9.8e-126 454.5 258 83.7
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 3.7e-125 452.6 368 61.7
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.9e-121 440.3 295 78.3
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 4.2e-121 439.1 385 56.9
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 7.0e-116 421.8 239 83.7
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 4.3e-113 412.5 228 86.8
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 9.9e-94 348.2 197 85.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.5e-78 297.7 420 41.4
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 3.3e-73 280.0 392 43.1
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.2e-67 261.5 183 71.0
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.8e-63 247.7 180 67.2
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.1e-57 228.4 141 75.9
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 1.9e-57 227.6 140 76.4
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 2.4e-55 220.7 130 82.3
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 8.7e-50 202.2 121 81.0
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.6e-19 101.7 128 46.1
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 6.1e-19 99.8 58 74.1
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 1.0e-10 72.4 337 23.1


User provided reference genes

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