Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p62650 Brassica napus HOM05D006135 ORTHO05D007533 2.4e-170 602.1 303 100.0
BraA09t41629Z Brassica rapa HOM05D006135 ORTHO05D007533 3.0e-168 595.1 303 99.0
BcaC07g41617 Brassica carinata HOM05D006135 ORTHO05D007533 8.1e-166 587.0 303 97.7
C08p46210 Brassica napus HOM05D006135 ORTHO05D007533 1.1e-165 586.6 303 97.4
BolC8t52170H Brassica oleracea HOM05D006135 ORTHO05D007533 1.1e-165 586.6 303 97.4
BcaB08g34333 Brassica carinata HOM05D006135 ORTHO05D007533 9.9e-164 580.1 303 96.7
CARHR014240 Cardamine hirsuta HOM05D006135 ORTHO05D007533 1.4e-157 559.7 303 92.1
Sp1g12090 Schrenkiella parvula HOM05D006135 ORTHO05D007533 2.6e-156 555.4 303 91.7
Carub.0001s1357 Capsella rubella HOM05D006135 ORTHO05D007533 1.7e-155 552.7 303 91.1
AL1G25700 Arabidopsis lyrata HOM05D006135 ORTHO05D007533 9.3e-154 547.0 303 90.4
AT1G13870 Arabidopsis thaliana HOM05D006135 ORTHO05D007533 1.6e-153 546.2 303 89.8
BraA08t35146Z Brassica rapa HOM05D006135 ORTHO05D007533 2.3e-152 542.3 299 89.6
A08p32230 Brassica napus HOM05D006135 ORTHO05D007533 2.5e-151 538.9 299 88.6
BcaB03g13127 Brassica carinata HOM05D006135 ORTHO05D007533 5.6e-151 537.7 299 89.3
BcaC07g38705 Brassica carinata HOM05D006135 ORTHO05D007533 1.5e-148 529.6 299 87.6
C08p16350 Brassica napus HOM05D006135 ORTHO05D007533 1.5e-148 529.6 299 87.6
BolC8t49259H Brassica oleracea HOM05D006135 ORTHO05D007533 1.5e-148 529.6 299 87.6
Aa31LG2G7130 Aethionema arabicum HOM05D006135 ORTHO05D007533 8.7e-136 487.3 301 79.1
Aa31LG1G1130 Aethionema arabicum HOM05D006135 ORTHO05D007533 5.7e-135 484.6 299 80.9
THA.LOC104824063 Tarenaya hassleriana HOM05D006135 ORTHO05D007533 3.4e-132 475.3 301 77.7
QL03p071327 Quercus lobata HOM05D006135 ORTHO05D007533 1.1e-127 460.3 302 76.5
CsaV3_6G032530 Cucumis sativus L. HOM05D006135 ORTHO05D007533 1.7e-126 456.4 300 74.3
CsaV3_6G033610 Cucumis sativus L. HOM05D006135 ORTHO05D007533 1.7e-126 456.4 300 74.3
MELO3C011427.2 Cucumis melo HOM05D006135 ORTHO05D007533 4.1e-125 451.8 300 73.7
Lj3g0000255 Lotus japonicus HOM05D006135 ORTHO05D007533 9.1e-125 450.7 300 72.3
Sed0023480 Sechium edule HOM05D006135 ORTHO05D007533 1.2e-124 450.3 300 74.0
Cpa.g.sc1.112 Carica papaya HOM05D006135 ORTHO05D007533 2.0e-124 449.5 302 73.8
Glyma.07G070800 Glycine max HOM05D006135 ORTHO05D007533 2.0e-124 449.5 302 72.8
CiPaw.06G091600 Carya illinoinensis HOM05D006135 ORTHO05D007533 2.6e-124 449.1 300 74.0
Ciclev10032231m.g Citrus clementina HOM05D006135 ORTHO05D007533 3.4e-124 448.7 298 75.2
Manes.07G067750 Manihot esculenta HOM05D006135 ORTHO05D007533 5.9e-124 448.0 300 72.7
Manes.07G067800 Manihot esculenta HOM05D006135 ORTHO05D007533 5.9e-124 448.0 300 72.7
VMungo0331G1135 Vigna mungo HOM05D006135 ORTHO05D007533 5.9e-124 448.0 302 72.5
Peaxi162Scf00155g00910 Petunia axillaris HOM05D006135 ORTHO05D007533 1.3e-123 446.8 300 74.0
PGR119G0479 Punica granatum HOM05D006135 ORTHO05D007533 1.3e-123 446.8 302 72.8
Duzib268G0538 Durio zibethinus HOM05D006135 ORTHO05D007533 1.7e-123 446.4 300 73.3
COL.COLO4_27903 Corchorus olitorius HOM05D006135 ORTHO05D007533 2.2e-123 446.0 302 72.5
Phvul.010G098900 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 2.2e-123 446.0 302 72.2
Phvul.011G076500 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 2.2e-123 446.0 302 72.2
Sabra10G0121200 Salix brachista HOM05D006135 ORTHO05D007533 3.8e-123 445.3 300 72.3
Thecc.02G333100 Theobroma cacao HOM05D006135 ORTHO05D007533 5.0e-123 444.9 302 73.2
Cc11_g12150 Coffea canephora HOM05D006135 ORTHO05D007533 1.1e-122 443.7 300 75.0
RcHm_v2.0_Chr4g0438561 Rosa chinensis HOM05D006135 ORTHO05D007533 2.5e-122 442.6 302 72.8
Gohir.D02G129100 Gossypium hirsutum HOM05D006135 ORTHO05D007533 3.2e-122 442.2 300 72.3
Gorai.005G144800 Gossypium raimondii HOM05D006135 ORTHO05D007533 3.2e-122 442.2 300 72.3
Hma1.2p1_0357F.1_g134610 Hydrangea macrophylla HOM05D006135 ORTHO05D007533 3.2e-122 442.2 298 73.8
Gohir.A03G103900 Gossypium hirsutum HOM05D006135 ORTHO05D007533 4.2e-122 441.8 300 72.3
Rhsim08G0202600 Rhododendron simsii HOM05D006135 ORTHO05D007533 9.4e-122 440.7 298 73.2
EL10Ac6g14988 Beta vulgaris HOM05D006135 ORTHO05D007533 1.2e-121 440.3 300 73.0
Lalb_Chr10g0096961 Lupinus albus HOM05D006135 ORTHO05D007533 1.6e-121 439.9 302 70.9
Sc04g0007660 Simmondsia chinensis HOM05D006135 ORTHO05D007533 2.7e-121 439.1 300 70.7
Eucgr.G02457 Eucalyptus grandis HOM05D006135 ORTHO05D007533 6.1e-121 438.0 302 71.9
SalBow2G2095 Salvia bowleyana HOM05D006135 ORTHO05D007533 1.0e-120 437.2 302 72.2
Atru.chr11.1655 Acer truncatum HOM05D006135 ORTHO05D007533 1.4e-120 436.8 301 73.1
CSS0045883 Camellia sinensis var. sinensis HOM05D006135 ORTHO05D007533 1.8e-120 436.4 298 71.8
FAN07G2159 Fragaria x ananassa HOM05D006135 ORTHO05D007533 1.8e-120 436.4 302 72.2
Potri.008G094600 Populus trichocarpa HOM05D006135 ORTHO05D007533 3.0e-120 435.6 300 71.7
FAN12G3645 Fragaria x ananassa HOM05D006135 ORTHO05D007533 3.9e-120 435.3 302 71.9
MD16G1062500 Malus domestica HOM05D006135 ORTHO05D007533 6.7e-120 434.5 298 72.1
Oeu004576.4 Olea europaea HOM05D006135 ORTHO05D007533 6.7e-120 434.5 300 71.7
FAN17G2903 Fragaria x ananassa HOM05D006135 ORTHO05D007533 8.8e-120 434.1 302 71.5
MSTRG.745 Avicennia marina HOM05D006135 ORTHO05D007533 1.1e-119 433.7 302 71.2
AUR62013291 Chenopodium quinoa HOM05D006135 ORTHO05D007533 1.1e-119 433.7 300 71.3
Lj6P780T42 Lonicera japonica HOM05D006135 ORTHO05D007533 1.5e-119 433.3 303 71.6
FvH4_4g30260 Fragaria vesca HOM05D006135 ORTHO05D007533 2.0e-119 433.0 302 71.5
Sopen08g004100 Solanum pennellii HOM05D006135 ORTHO05D007533 3.3e-119 432.2 300 72.0
PGSC0003DMG400005786 Solanum tuberosum HOM05D006135 ORTHO05D007533 4.4e-119 431.8 300 72.0
FAN22G2161 Fragaria x ananassa HOM05D006135 ORTHO05D007533 9.7e-119 430.6 302 70.9
AUR62007931 Chenopodium quinoa HOM05D006135 ORTHO05D007533 1.3e-118 430.3 300 70.7
ECA246G3492 Erigeron canadensis HOM05D006135 ORTHO05D007533 2.2e-118 429.5 300 70.3
HanXRQChr12g0375331 Helianthus annuus HOM05D006135 ORTHO05D007533 3.7e-118 428.7 300 70.3
CAN.G792.64 Capsicum annuum HOM05D006135 ORTHO05D007533 4.8e-118 428.3 300 71.0
Prupe.1G285000 Prunus persica HOM05D006135 ORTHO05D007533 6.3e-118 427.9 298 70.5
TAR622G1353 Trochodendron aralioides HOM05D006135 ORTHO05D007533 8.2e-118 427.6 300 71.7
Migut.L01201 Erythranthe guttata HOM05D006135 ORTHO05D007533 1.8e-117 426.4 298 70.1
Lsat_1_v5_gn_3_56041 Lactuca sativa HOM05D006135 ORTHO05D007533 5.3e-117 424.9 300 69.7
PSO170G2502 Papaver somniferum HOM05D006135 ORTHO05D007533 5.3e-117 424.9 300 70.3
SalBow6G2218 Salvia bowleyana HOM05D006135 ORTHO05D007533 7.7e-116 421.0 294 70.4
CANSAT64G3010 Cannabis sativa HOM05D006135 ORTHO05D007533 5.0e-115 418.3 304 68.1
Zm00001eb298610 Zea mays HOM05D006135 ORTHO05D007533 2.1e-113 412.9 300 67.0
CANSAT64G1447 Cannabis sativa HOM05D006135 ORTHO05D007533 2.7e-113 412.5 304 67.8
TPR.G19440 Trifolium pratense HOM05D006135 ORTHO05D007533 2.7e-113 412.5 304 68.1
Medtr8g446960 Medicago truncatula HOM05D006135 ORTHO05D007533 2.3e-112 409.5 305 68.2
SGA_v2.0_scaffold308G48068 Striga asiatica HOM05D006135 ORTHO05D007533 4.0e-112 408.7 303 67.7
Medtr8g030830 Medicago truncatula HOM05D006135 ORTHO05D007533 6.7e-112 407.9 305 68.2
PSO017G0525 Papaver somniferum HOM05D006135 ORTHO05D007533 2.6e-111 406.0 300 68.3
TAR374G0384 Trochodendron aralioides HOM05D006135 ORTHO05D007533 2.6e-111 406.0 302 69.2
Dinv34082 Davidia involucrata HOM05D006135 ORTHO05D008017 3.3e-111 405.6 293 70.3
Psat4g154880 Pisum sativum HOM05D006135 ORTHO05D007533 1.3e-110 403.7 304 68.1
MBI03_g07691_MAGBIO Magnolia biondii HOM05D006135 ORTHO05D007533 4.8e-110 401.7 310 66.1
Ah.04g155380 Amaranthus hybridus HOM05D001254 ORTHO05D007533 3.5e-108 395.6 284 68.3
SGA_v2.0_scaffold36G14447 Striga asiatica HOM05D006135 ORTHO05D007533 5.9e-108 394.8 303 66.3
unitig_22.g6497 Utricularia gibba HOM05D006135 ORTHO05D007533 1.3e-107 393.7 302 64.9
Sabra08G0071100 Salix brachista HOM05D006135 ORTHO05D007533 1.4e-104 383.6 275 69.5
HPP92_017746 Vanilla planifolia HOM05D006135 ORTHO05D007533 2.3e-104 382.9 302 64.6
HanXRQChr13g0417131 Helianthus annuus HOM05D006135 ORTHO05D007533 8.6e-99 364.4 248 70.2
Solyc08g008250.3 Solanum lycopersicum HOM05D006135 ORTHO05D007533 6.1e-97 358.2 248 71.4
ClCG08G010310 Citrullus lanatus HOM05D006135 ORTHO05D008017 2.2e-94 349.7 221 74.2
SHI21260 Sapria himalayana HOM05D006135 ORTHO05D007533 2.2e-94 349.7 297 58.6
SMO115G0347 Selaginella moellendorffii HOM05D006135 ORTHO05D007533 4.1e-93 345.5 303 59.7
Pp3c10_170 Physcomitrium patens HOM05D006135 ORTHO05D007533 6.6e-91 338.2 303 58.4
CDE04G1019 Ceratophyllum demersum HOM05D006135 ORTHO05D007533 7.3e-90 334.7 248 67.7
Nitab4.5_0000100g0120 Nicotiana tabacum HOM05D006135 ORTHO05D007533 3.6e-89 332.4 224 72.3
ATR1136G145 Amborella trichopoda HOM05D006135 ORTHO05D007533 1.4e-88 330.5 254 64.6
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 4.0e-88 328.9 256 65.6
Aqoxy6G00083 Aquilegia oxysepala HOM05D006135 ORTHO05D007533 5.7e-87 325.1 219 73.5
Haze_11974 Corylus avellana HOM05D006135 ORTHO05D007533 2.2e-86 323.2 227 70.0
SalBow6G7020 Salvia bowleyana HOM05D006135 ORTHO05D007533 1.2e-84 317.4 224 68.8
Duzib251G0397 Durio zibethinus HOM05D006135 ORTHO05D007533 1.6e-84 317.0 235 65.1
SalBow2G1772 Salvia bowleyana HOM05D006135 ORTHO05D007533 1.6e-84 317.0 220 70.5
Mapoly0008s0061 Marchantia polymorpha HOM05D006135 ORTHO05D007533 1.2e-81 307.4 277 56.3
CBR_g32247 Chara braunii HOM05D006135 ORTHO05D007533 1.6e-73 280.4 338 47.3
Nn3g17430 Nelumbo nucifera HOM05D006135 ORTHO05D007533 1.7e-70 270.4 300 53.0
vmacro19077 Vaccinium macrocarpon HOM05D006135 ORTHO05D007533 9.5e-66 254.6 173 68.8
Cre17.g711050 Chlamydomonas reinhardtii HOM05D006135 ORTHO05D007533 2.0e-55 220.3 319 42.3
PRCOL_00001916 Prasinoderma coloniale HOM05D006135 ORTHO05D007533 4.8e-41 172.6 332 35.2
Oeu025274.1 Olea europaea HOM05D006135 ORTHO05D007533 6.2e-41 172.2 157 59.9
MCO02G221 Micromonas commoda HOM05D006135 ORTHO05D007533 3.4e-39 166.4 177 49.7
Pp3c8_25320 Physcomitrium patens HOM05D006135 ORTHO05D007533 5.8e-39 165.6 162 53.1
SEGI_02005 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 3.0e-35 153.3 105 72.4
GSVIVG01012190001 Vitis vinifera HOM05D001577 ORTHO05D008017 8.2e-33 145.2 302 34.8
Dinv16720 Davidia involucrata HOM05D006135 ORTHO05D007533 1.0e-30 138.3 87 72.4
DCAR_030035 Daucus carota HOM05D006135 ORTHO05D007533 1.5e-23 114.4 88 63.6
Cfa026301 Carpinus fangiana HOM05D006135 ORTHO05D007533 7.6e-23 112.1 350 30.6
HPP92_017676 Vanilla planifolia HOM05D006135 ORTHO05D007533 1.1e-21 108.2 135 48.9
Lsat_1_v5_gn_2_78301 Lactuca sativa HOM05D006135 ORTHO05D007533 1.9e-21 107.5 91 62.6
AagrBONN_evm.TU.Sc2ySwM_362.1915 Anthoceros agrestis HOM05D006135 ORTHO05D007533 2.5e-21 107.1 72 66.7
Os11g0312340 Oryza sativa ssp. japonica HOM05D006135 ORTHO05D007533 3.2e-21 106.7 86 66.3
Lalb_Chr17g0339631 Lupinus albus HOM05D006135 ORTHO05D007533 4.8e-17 92.8 64 76.6
SEGI_31918 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 1.1e-16 91.7 67 56.7
Glyma.03G009300 Glycine max HOM05D006135 ORTHO05D007533 6.3e-09 65.9 42 69.0


User provided reference genes

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