Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 4.1e-287 990.7 505 100.0
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 1.7e-285 985.3 505 99.8
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.5e-265 919.1 510 93.3
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 1.8e-263 912.1 510 92.5
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 8.6e-245 850.1 505 85.7
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 9.5e-244 846.7 518 84.6
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 2.9e-240 835.1 518 83.4
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 8.0e-235 817.0 509 85.7
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 2.0e-233 812.4 518 82.6
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 2.3e-229 798.9 518 80.1
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 2.1e-227 792.3 518 80.5
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 6.8e-218 760.8 519 76.7
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 8.7e-205 717.2 519 73.6
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 2.1e-203 712.6 519 72.3
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 3.6e-203 711.8 519 72.8
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 8.1e-203 710.7 525 72.4
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 4.0e-202 708.4 519 72.6
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 5.3e-202 708.0 519 72.3
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 1.5e-201 706.4 519 72.1
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 1.5e-201 706.4 519 72.3
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 4.4e-201 704.9 527 71.7
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 5.4e-199 698.0 519 71.5
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 2.7e-198 695.7 519 71.5
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 7.9e-198 694.1 508 73.0
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 5.6e-196 688.0 524 71.2
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 2.0e-193 679.5 528 66.9
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 6.4e-192 674.5 528 66.3
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 1.1e-191 673.7 538 66.9
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 1.9e-191 672.9 528 65.9
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 1.9e-191 672.9 528 66.3
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 1.6e-190 669.8 521 66.8
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 3.0e-189 665.6 529 65.4
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 8.7e-189 664.1 528 66.3
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 4.3e-188 661.8 528 65.5
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 1.3e-187 660.2 531 65.2
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 4.0e-186 655.2 524 64.5
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 2.0e-185 652.9 529 65.0
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 2.6e-185 652.5 529 64.5
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 4.5e-185 651.7 527 63.6
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 2.9e-184 649.0 528 64.2
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 8.4e-184 647.5 529 64.8
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 1.4e-183 646.7 528 64.8
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 4.2e-183 645.2 528 64.8
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 7.1e-183 644.4 509 63.3
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 7.1e-183 644.4 526 65.0
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 3.5e-182 642.1 524 64.1
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 3.5e-182 642.1 528 64.6
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 6.0e-182 641.3 520 66.0
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.0e-181 640.6 524 64.5
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 3.0e-181 639.0 528 63.4
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 1.5e-180 636.7 528 63.4
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 2.5e-180 636.0 528 64.0
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 2.5e-180 636.0 534 61.8
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 1.3e-179 633.6 519 65.3
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 1.6e-179 633.3 528 62.9
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 2.1e-179 632.9 523 65.0
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 2.8e-179 632.5 521 63.5
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 2.8e-179 632.5 530 62.3
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 6.3e-179 631.3 524 63.0
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 6.3e-179 631.3 528 64.2
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 1.1e-178 630.6 527 63.0
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 1.1e-178 630.6 521 64.3
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 2.0e-177 626.3 530 62.5
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 2.0e-177 626.3 528 64.2
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 2.0e-177 626.3 526 63.5
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 4.5e-177 625.2 528 62.5
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 6.5e-176 621.3 574 59.4
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 1.1e-175 620.5 509 62.1
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 1.4e-175 620.2 512 65.0
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 1.9e-175 619.8 501 63.7
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 1.9e-175 619.8 527 63.0
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 4.2e-175 618.6 506 63.4
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 7.2e-175 617.8 575 58.8
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 2.1e-174 616.3 511 62.2
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 2.1e-174 616.3 532 62.0
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 2.1e-174 616.3 529 62.4
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 6.1e-174 614.8 523 63.1
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 6.1e-174 614.8 523 63.1
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 6.7e-173 611.3 519 61.5
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 1.5e-172 610.1 517 63.4
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 4.3e-172 608.6 529 59.4
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 1.6e-171 606.7 528 61.2
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 6.3e-171 604.7 527 62.0
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 1.1e-170 604.0 512 62.9
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 6.9e-170 601.3 516 59.9
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 3.4e-169 599.0 540 59.1
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 5.9e-169 598.2 473 65.8
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 5.0e-168 595.1 520 60.2
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.9e-167 593.2 516 59.5
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 1.8e-165 586.6 521 59.1
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 5.3e-162 575.1 502 61.4
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 1.2e-161 573.9 507 58.8
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 1.4e-159 567.0 509 61.7
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 4.7e-158 562.0 517 60.0
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 6.1e-158 561.6 529 56.7
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 6.7e-157 558.1 513 59.1
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 5.9e-153 545.0 511 57.3
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 2.5e-151 539.7 516 57.8
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 1.6e-150 537.0 516 57.4
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 8.0e-150 534.6 559 53.3
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 1.8e-149 533.5 513 56.1
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 8.8e-149 531.2 445 62.7
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 1.5e-148 530.4 434 62.4
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 2.6e-148 529.6 531 53.9
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 2.8e-147 526.2 529 54.6
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 8.2e-147 524.6 415 63.4
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 8.3e-139 498.0 526 54.2
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 4.1e-138 495.7 464 58.2
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 1.2e-134 484.2 497 53.1
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 9.8e-124 448.0 449 55.2
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 5.4e-114 415.6 543 44.2
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 3.9e-112 409.5 357 61.9
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 5.6e-111 405.6 531 44.4
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 5.2e-109 399.1 405 55.8
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 4.4e-108 396.0 503 44.3
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 7.1e-106 388.7 384 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 4.1e-98 362.8 486 43.0
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 2.8e-86 323.6 482 43.2
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 1.5e-60 238.0 243 57.2
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 2.3e-48 197.6 139 71.2
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 7.9e-41 172.6 428 35.5
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 3.3e-39 167.2 131 65.6
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 4.1e-37 160.2 151 62.9
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 1.1e-26 125.6 98 70.4
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-22 111.3 143 37.8
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 2.7e-20 104.4 72 62.5
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 4.5e-20 103.6 78 60.3
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 6.5e-19 99.8 79 63.3
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 4.2e-18 97.1 99 51.5
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.4e-16 92.0 71 66.2
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 4.4e-15 87.0 326 26.1
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 6.6e-11 73.2 113 48.7
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 1.4e-08 65.5 45 71.1
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 8.9e-08 62.8 58 48.3
MCO11G935 Micromonas commoda HOM05D005650 ORTHO05D007020 4.9e-06 57.0 288 25.3


User provided reference genes

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