Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p60560 Brassica napus HOM05D003546 ORTHO05D005667 2.8e-17 90.9 46 100.0
BraA09t41426Z Brassica rapa HOM05D003546 ORTHO05D005667 2.8e-17 90.9 46 100.0
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 2.0e-15 84.7 46 91.3
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 2.6e-15 84.3 46 91.3
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 7.5e-15 82.8 46 89.1
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 1.3e-14 82.0 44 88.6
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 1.3e-14 82.0 46 87.0
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 2.2e-14 81.3 44 88.6
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 2.2e-14 81.3 44 88.6
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 3.7e-14 80.5 45 88.9
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 3.7e-14 80.5 43 88.4
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 4.9e-14 80.1 46 87.0
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 4.9e-14 80.1 44 86.4
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 1.9e-13 78.2 44 86.4
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 1.9e-13 78.2 44 86.4
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 4.1e-13 77.0 46 82.6
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 9.2e-13 75.9 43 86.0
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 1.3e-11 72.0 43 79.1
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 1.3e-11 72.0 43 81.4
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 1.7e-11 71.6 43 79.1
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 1.7e-11 71.6 43 79.1
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 1.7e-11 71.6 43 79.1
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.7e-11 71.6 43 79.1
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.7e-11 71.6 43 79.1
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 1.7e-11 71.6 43 76.7
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 2.3e-11 71.2 43 79.1
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 3.0e-11 70.9 44 77.3
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 3.0e-11 70.9 41 82.9
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 3.0e-11 70.9 41 82.9
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 3.0e-11 70.9 43 79.1
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 3.0e-11 70.9 42 81.0
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 3.0e-11 70.9 43 79.1
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 3.0e-11 70.9 43 79.1
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 3.9e-11 70.5 43 79.1
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 3.9e-11 70.5 41 82.9
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 3.9e-11 70.5 42 78.6
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 3.9e-11 70.5 42 81.0
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 3.9e-11 70.5 43 76.7
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 3.9e-11 70.5 43 79.1
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 5.1e-11 70.1 43 76.7
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 5.1e-11 70.1 43 79.1
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 6.6e-11 69.7 43 76.7
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 6.6e-11 69.7 43 76.7
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 6.6e-11 69.7 44 75.0
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 6.6e-11 69.7 44 75.0
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 6.6e-11 69.7 44 75.0
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 6.6e-11 69.7 46 71.7
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 8.6e-11 69.3 43 79.1
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 8.6e-11 69.3 43 76.7
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 8.6e-11 69.3 41 80.5
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 8.6e-11 69.3 41 80.5
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 8.6e-11 69.3 43 76.7
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 8.6e-11 69.3 43 74.4
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 8.6e-11 69.3 43 74.4
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 8.6e-11 69.3 41 80.5
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 1.1e-10 68.9 43 76.7
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 1.1e-10 68.9 44 77.3
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 1.1e-10 68.9 42 76.2
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 1.5e-10 68.6 43 74.4
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 1.5e-10 68.6 43 74.4
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 1.5e-10 68.6 43 74.4
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 1.5e-10 68.6 43 74.4
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 1.9e-10 68.2 43 72.1
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.9e-10 68.2 41 78.0
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.9e-10 68.2 41 78.0
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 1.9e-10 68.2 41 78.0
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 1.9e-10 68.2 43 72.1
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 1.9e-10 68.2 41 78.0
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 1.9e-10 68.2 43 72.1
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 1.9e-10 68.2 43 76.7
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 1.9e-10 68.2 43 76.7
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 1.9e-10 68.2 42 78.6
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 2.5e-10 67.8 45 71.1
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 2.5e-10 67.8 43 74.4
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 2.5e-10 67.8 43 74.4
GSVIVG01014076001 Vitis vinifera HOM05D003546 ORTHO05D005667 2.5e-10 67.8 42 76.2
Cc05_g10570 Coffea canephora HOM05D003546 ORTHO05D005667 3.3e-10 67.4 44 70.5
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 3.3e-10 67.4 43 76.7
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 4.3e-10 67.0 41 78.0
arahy.Tifrunner.gnm1.ann1.FE4UN0 Arachis hypogaea HOM05D003546 ORTHO05D005667 5.6e-10 66.6 41 75.6
arahy.Tifrunner.gnm1.ann1.JM4QTS Arachis hypogaea HOM05D003546 ORTHO05D005667 5.6e-10 66.6 41 75.6
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 5.6e-10 66.6 42 76.2
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 5.6e-10 66.6 45 75.6
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 5.6e-10 66.6 42 78.6
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 7.3e-10 66.2 44 70.5
VMungo1080G0318 Vigna mungo HOM05D003546 ORTHO05D005667 7.3e-10 66.2 41 78.0
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 9.5e-10 65.9 43 74.4
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 9.5e-10 65.9 43 72.1
VMungo1080G1435 Vigna mungo HOM05D003546 ORTHO05D005667 1.2e-09 65.5 41 75.6
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 1.6e-09 65.1 43 72.1
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 1.6e-09 65.1 43 74.4
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 1.6e-09 65.1 42 76.2
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 1.6e-09 65.1 41 78.0
AUR62019675 Chenopodium quinoa HOM05D003546 ORTHO05D005667 2.8e-09 64.3 37 81.1
Glyma.13G263300 Glycine max HOM05D003546 ORTHO05D005667 2.8e-09 64.3 41 75.6
Glyma.13G263400 Glycine max HOM05D003546 ORTHO05D005667 2.8e-09 64.3 41 75.6
Glyma.15G240800 Glycine max HOM05D003546 ORTHO05D005667 2.8e-09 64.3 41 75.6
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 3.6e-09 63.9 43 65.1
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 3.6e-09 63.9 43 67.4
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 3.6e-09 63.9 42 73.8
Phvul.005G070000 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 3.6e-09 63.9 41 73.2
SalBow8G3953 Salvia bowleyana HOM05D003546 ORTHO05D005667 3.6e-09 63.9 42 71.4
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 3.6e-09 63.9 38 78.9
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 4.7e-09 63.5 42 76.2
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 8.1e-09 62.8 37 78.4
Haze_08457 Corylus avellana HOM05D003546 ORTHO05D005667 1.5e-07 58.5 39 74.4
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 2.6e-07 57.8 45 64.4
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 3.4e-07 57.4 39 74.4
HPP92_024629 Vanilla planifolia HOM05D003546 ORTHO05D005667 1.7e-06 55.1 42 57.1
Mapoly0014s0091 Marchantia polymorpha HOM05D003546 ORTHO05D005667 4.9e-06 53.5 42 59.5


User provided reference genes

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