Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p59140 Brassica napus HOM05D003223 ORTHO05D014735 2.1e-67 258.8 126 100.0
BcaC06g36382 Brassica carinata HOM05D003223 ORTHO05D014735 7.5e-65 250.4 125 97.6
A02p33360 Brassica napus HOM05D003223 ORTHO05D014735 1.3e-61 239.6 116 98.3
BraA08t32416Z Brassica rapa HOM05D003223 ORTHO05D014735 1.3e-61 239.6 116 98.3
BraA03t12952Z Brassica rapa HOM05D003223 ORTHO05D014735 1.2e-59 233.0 117 96.6
BcaB07g29887 Brassica carinata HOM05D003223 ORTHO05D004865 2.3e-58 228.8 125 88.0
Sp2g23580 Schrenkiella parvula HOM05D003223 ORTHO05D004865 2.2e-56 222.2 125 86.4
BcaC03g18022 Brassica carinata HOM05D003223 ORTHO05D004865 6.4e-56 220.7 125 87.2
A02p40880 Brassica napus HOM05D003223 ORTHO05D004865 6.4e-56 220.7 125 87.2
C02p60780 Brassica napus HOM05D003223 ORTHO05D004865 6.4e-56 220.7 125 87.2
Thhalv10003540m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 1.8e-55 219.2 125 84.0
Carub.0006s2139 Capsella rubella HOM05D003223 ORTHO05D004865 4.1e-55 218.0 125 83.2
CARHR189920 Cardamine hirsuta HOM05D003223 ORTHO05D004865 1.2e-54 216.5 125 82.4
C09p07570 Brassica napus HOM05D003223 ORTHO05D004865 2.3e-53 212.2 125 82.4
A09p06850 Brassica napus HOM05D003223 ORTHO05D004865 8.6e-53 210.3 125 81.6
Aa31LG11G3010 Aethionema arabicum HOM05D003223 ORTHO05D004865 1.1e-52 209.9 125 78.4
BcaC04g23507 Brassica carinata HOM05D003223 ORTHO05D004865 1.1e-52 209.9 125 81.6
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 1.1e-52 209.9 125 81.6
BraA09t36331Z Brassica rapa HOM05D003223 ORTHO05D004865 1.5e-52 209.5 125 81.6
BolC9t53674H Brassica oleracea HOM05D003223 ORTHO05D004865 3.3e-52 208.4 125 81.6
THA.LOC104800414 Tarenaya hassleriana HOM05D003223 ORTHO05D004865 2.1e-51 205.7 125 78.4
BraA02t09034Z Brassica rapa HOM05D003223 ORTHO05D004865 1.0e-50 203.4 137 77.4
AT5G23630 Arabidopsis thaliana HOM05D003223 ORTHO05D004865 1.4e-50 203.0 125 80.0
BolC2t12130H Brassica oleracea HOM05D003223 ORTHO05D004865 3.1e-50 201.8 136 77.2
AL6G34910 Arabidopsis lyrata HOM05D003223 ORTHO05D004865 8.9e-50 200.3 125 78.4
Atru.chr8.881 Acer truncatum HOM05D003223 ORTHO05D004865 1.0e-45 186.8 125 72.0
Thecc.05G191900 Theobroma cacao HOM05D003223 ORTHO05D004865 1.7e-45 186.0 125 70.4
Manes.17G018800 Manihot esculenta HOM05D003223 ORTHO05D004865 3.9e-45 184.9 125 70.4
QL10p038436 Quercus lobata HOM05D003223 ORTHO05D004865 3.9e-45 184.9 126 70.6
Ca_17035_v3 Cicer arietinum L. HOM05D003223 ORTHO05D004865 5.0e-45 184.5 125 72.0
Duzib177G0522 Durio zibethinus HOM05D003223 ORTHO05D004865 5.0e-45 184.5 125 69.6
Sed0001545 Sechium edule HOM05D003223 ORTHO05D004865 6.6e-45 184.1 125 67.2
Dinv17906 Davidia involucrata HOM05D003223 ORTHO05D004865 1.1e-44 183.3 125 71.2
Lj1g0018228 Lotus japonicus HOM05D003223 ORTHO05D004865 1.5e-44 183.0 125 68.8
Gohir.A13G115100 Gossypium hirsutum HOM05D003223 ORTHO05D004865 2.5e-44 182.2 125 69.6
Gorai.013G132500 Gossypium raimondii HOM05D003223 ORTHO05D004865 2.5e-44 182.2 125 69.6
GSVIVG01000234001 Vitis vinifera HOM05D003223 ORTHO05D004865 3.3e-44 181.8 121 69.4
MELO3C004336.2 Cucumis melo HOM05D003223 ORTHO05D004865 5.6e-44 181.0 125 66.4
Glyma.04G204800 Glycine max HOM05D003223 ORTHO05D004865 5.6e-44 181.0 125 68.8
Cpa.g.sc170.64 Carica papaya HOM05D003223 ORTHO05D014735 7.3e-44 180.6 125 69.6
Glyma.06G160800 Glycine max HOM05D003223 ORTHO05D004865 7.3e-44 180.6 125 68.0
PGR031G3736 Punica granatum HOM05D003223 ORTHO05D004865 1.2e-43 179.9 121 68.6
SalBow7G2948 Salvia bowleyana HOM05D003223 ORTHO05D004865 1.2e-43 179.9 125 68.0
Gohir.D13G118000 Gossypium hirsutum HOM05D003223 ORTHO05D004865 1.6e-43 179.5 125 68.8
CsaV3_2G004550 Cucumis sativus L. HOM05D003223 ORTHO05D004865 2.8e-43 178.7 125 65.6
Prupe.1G560300 Prunus persica HOM05D003223 ORTHO05D004865 4.7e-43 177.9 125 67.2
Lj3A927G13 Lonicera japonica HOM05D003223 ORTHO05D004865 8.1e-43 177.2 120 70.8
RcHm_v2.0_Chr7g0225451 Rosa chinensis HOM05D003223 ORTHO05D004865 8.1e-43 177.2 125 69.6
Dinv18129 Davidia involucrata HOM05D003223 ORTHO05D004865 1.4e-42 176.4 125 64.0
FAN08G3025 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.8e-42 176.0 125 69.6
TPR.G7796 Trifolium pratense HOM05D003223 ORTHO05D004865 1.8e-42 176.0 125 65.6
Peaxi162Scf00647g00521 Petunia axillaris HOM05D003223 ORTHO05D004865 3.1e-42 175.3 125 66.4
Migut.N00792 Erythranthe guttata HOM05D003223 ORTHO05D004865 4.0e-42 174.9 125 66.4
Potri.T012200 Populus trichocarpa HOM05D003223 ORTHO05D004865 4.0e-42 174.9 123 65.0
TWI75G0742 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 4.0e-42 174.9 126 67.5
FAN13G2597 Fragaria x ananassa HOM05D003223 ORTHO05D004865 5.2e-42 174.5 125 69.6
Eucgr.H05054 Eucalyptus grandis HOM05D003223 ORTHO05D004865 6.8e-42 174.1 121 69.4
FvH4_5g30560 Fragaria vesca HOM05D003223 ORTHO05D004865 6.8e-42 174.1 125 69.6
FAN18G2297 Fragaria x ananassa HOM05D003223 ORTHO05D004865 6.8e-42 174.1 125 69.6
Oeu024851.1 Olea europaea HOM05D003223 ORTHO05D004865 6.8e-42 174.1 125 65.6
TWI31G0834 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 6.8e-42 174.1 123 66.7
FAN04G0579 Fragaria x ananassa HOM05D003223 ORTHO05D004865 2.6e-41 172.2 125 68.8
MD15G1415900 Malus domestica HOM05D003223 ORTHO05D004865 4.4e-41 171.4 125 68.0
Potri.004G137100 Populus trichocarpa HOM05D003223 ORTHO05D004865 4.4e-41 171.4 122 66.4
Hund13720 Selenicereus undatus HOM05D003223 ORTHO05D004865 4.4e-41 171.4 123 64.2
TAR636G0043 Trochodendron aralioides HOM05D003223 ORTHO05D004865 4.4e-41 171.4 125 62.4
CiPaw.15G184200 Carya illinoinensis HOM05D003223 ORTHO05D004865 7.5e-41 170.6 125 66.4
Lalb_Chr11g0068881 Lupinus albus HOM05D003223 ORTHO05D004865 9.8e-41 170.2 125 64.8
arahy.Tifrunner.gnm1.ann1.MF06QU Arachis hypogaea HOM05D003223 ORTHO05D004865 1.3e-40 169.9 112 72.3
MSTRG.297 Avicennia marina HOM05D003223 ORTHO05D004865 1.3e-40 169.9 123 65.0
Haze_19344 Corylus avellana HOM05D003223 ORTHO05D004865 1.3e-40 169.9 118 70.3
MD08G1222500 Malus domestica HOM05D003223 ORTHO05D004865 1.3e-40 169.9 125 68.0
Hma1.2p1_1945F.1_g308610 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 1.7e-40 169.5 125 62.4
arahy.Tifrunner.gnm1.ann1.KDQ8ZI Arachis hypogaea HOM05D003223 ORTHO05D004865 2.2e-40 169.1 137 62.0
Lsat_1_v5_gn_4_179580 Lactuca sativa HOM05D003223 ORTHO05D004865 2.2e-40 169.1 120 65.0
Sc09g0001160 Simmondsia chinensis HOM05D003223 ORTHO05D004865 2.2e-40 169.1 125 63.2
Phvul.009G158500 Phaseolus vulgaris HOM05D003223 ORTHO05D004865 2.9e-40 168.7 125 66.4
VMungo1127G0078 Vigna mungo HOM05D003223 ORTHO05D004865 3.7e-40 168.3 125 66.4
MSTRG.8249 Avicennia marina HOM05D003223 ORTHO05D004865 4.9e-40 167.9 125 62.4
vmacro18729 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 4.9e-40 167.9 116 68.1
Ciclev10018565m.g Citrus clementina HOM05D003223 ORTHO05D004865 6.4e-40 167.5 123 66.7
Nn3g20196 Nelumbo nucifera HOM05D003223 ORTHO05D004865 6.4e-40 167.5 115 67.8
PGSC0003DMG400027506 Solanum tuberosum HOM05D003223 ORTHO05D004865 6.4e-40 167.5 125 64.0
Rhsim02G0071800 Rhododendron simsii HOM05D003223 ORTHO05D004865 8.3e-40 167.2 121 64.5
CANSAT54G2149 Cannabis sativa HOM05D003223 ORTHO05D004865 1.1e-39 166.8 115 64.3
Thhalv10027626m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 1.1e-39 166.8 115 75.7
Aqoxy4G02048 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 1.4e-39 166.4 125 62.4
Sed0007652 Sechium edule HOM05D003223 ORTHO05D004865 1.4e-39 166.4 125 62.4
ECA232G4880 Erigeron canadensis HOM05D003223 ORTHO05D004865 2.4e-39 165.6 120 65.0
Cc11_g05040 Coffea canephora HOM05D003223 ORTHO05D004865 4.1e-39 164.9 125 61.6
Sopen01g040540 Solanum pennellii HOM05D003223 ORTHO05D004865 4.1e-39 164.9 125 63.2
Cfa020911 Carpinus fangiana HOM05D003223 ORTHO05D004865 5.4e-39 164.5 125 65.6
Nitab4.5_0006602g0010 Nicotiana tabacum HOM05D003223 ORTHO05D004865 5.4e-39 164.5 125 62.4
Lalb_Chr08g0237721 Lupinus albus HOM05D003223 ORTHO05D004865 7.1e-39 164.1 125 62.4
Psat5g057040 Pisum sativum HOM05D003223 ORTHO05D004865 7.1e-39 164.1 120 65.0
Solyc01g096830.3 Solanum lycopersicum HOM05D003223 ORTHO05D004865 7.1e-39 164.1 121 65.3
SGA_v2.0_scaffold2G01007 Striga asiatica HOM05D003223 ORTHO05D004865 7.1e-39 164.1 125 61.6
CAN.G134.46 Capsicum annuum HOM05D003223 ORTHO05D004865 9.2e-39 163.7 125 62.4
Medtr3g097560 Medicago truncatula HOM05D003223 ORTHO05D004865 2.1e-38 162.5 125 64.0
COL.COLO4_04896 Corchorus olitorius HOM05D003223 ORTHO05D004865 3.5e-38 161.8 125 65.6
EL10Ac2g04575 Beta vulgaris HOM05D003223 ORTHO05D004865 3.9e-37 158.3 114 64.0
HanXRQChr09g0265231 Helianthus annuus HOM05D003223 ORTHO05D004865 3.9e-37 158.3 120 60.8
DCAR_009034 Daucus carota HOM05D003223 ORTHO05D004865 8.6e-37 157.1 121 60.3
ATR0064G028 Amborella trichopoda HOM05D003223 ORTHO05D004865 3.3e-36 155.2 121 56.2
AUR62023309 Chenopodium quinoa HOM05D003223 ORTHO05D004865 3.3e-36 155.2 114 63.2
Sabra19G0010100 Salix brachista HOM05D003223 ORTHO05D014735 2.1e-35 152.5 104 65.4
CDE04G0779 Ceratophyllum demersum HOM05D003223 ORTHO05D014735 6.2e-35 151.0 111 60.4
Aqoxy5G02750 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 8.1e-35 150.6 129 55.8
HPP92_022123 Vanilla planifolia HOM05D003223 ORTHO05D004865 1.1e-34 150.2 126 59.5
AUR62008992 Chenopodium quinoa HOM05D003223 ORTHO05D004865 1.4e-34 149.8 114 62.3
HPP92_022135 Vanilla planifolia HOM05D003223 ORTHO05D004865 1.8e-34 149.4 126 59.5
PSO339G5522 Papaver somniferum HOM05D003223 ORTHO05D004865 2.0e-33 146.0 121 56.2
DCAR_020438 Daucus carota HOM05D003223 ORTHO05D004865 4.4e-33 144.8 116 56.9
PSO384G3388 Papaver somniferum HOM05D003223 ORTHO05D004865 4.4e-33 144.8 121 56.2
unitig_0.g1012 Utricularia gibba HOM05D003223 ORTHO05D004865 9.9e-33 143.7 119 60.5
Zm00001eb287640 Zea mays HOM05D003223 ORTHO05D004865 1.0e-29 133.7 125 52.0
SEGI_11553 Sequoiadendron giganteum HOM05D003223 ORTHO05D004865 6.6e-29 131.0 118 52.5
Dinv04531 Davidia involucrata HOM05D003223 ORTHO05D014735 7.3e-28 127.5 85 62.4
Actinidia26636 Actinidia chinensis HOM05D003223 ORTHO05D014735 1.2e-27 126.7 91 63.7
Sabra19G0001800 Salix brachista HOM05D003223 ORTHO05D004865 1.4e-26 123.2 81 65.4
Sabra19G0010800 Salix brachista HOM05D003223 ORTHO05D033830 3.1e-26 122.1 81 64.2
Sabra19G0010900 Salix brachista HOM05D003223 ORTHO05D004865 3.1e-26 122.1 81 64.2
Ah.04g166340 Amaranthus hybridus HOM05D002795 ORTHO05D004865 4.0e-26 121.7 84 66.7
CDE02G1396 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 5.2e-26 121.3 83 63.9
Sabra19G0010200 Salix brachista HOM05D003223 ORTHO05D014735 1.5e-25 119.8 81 64.2
AagrBONN_evm.TU.Sc2ySwM_368.2673 Anthoceros agrestis HOM05D003223 ORTHO05D004865 7.6e-25 117.5 121 47.9
Mapoly0002s0327 Marchantia polymorpha HOM05D003223 ORTHO05D004865 6.4e-24 114.4 117 50.4
Pp3c2_5380 Physcomitrium patens HOM05D003223 ORTHO05D004865 1.4e-23 113.2 115 50.4
Os05g0402800 Oryza sativa ssp. japonica HOM05D003223 ORTHO05D004865 1.7e-21 106.3 87 54.0
Nitab4.5_0002687g0120 Nicotiana tabacum HOM05D003223 ORTHO05D004865 2.5e-20 102.4 94 59.6
CSS0030679 Camellia sinensis var. sinensis HOM05D003223 ORTHO05D004865 3.3e-20 102.1 66 65.2
CBR_g48843 Chara braunii HOM05D003223 ORTHO05D004865 2.4e-18 95.9 112 42.9
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.4e-15 86.7 56 71.4
Actinidia28935 Actinidia chinensis HOM05D003223 ORTHO05D004865 4.2e-15 85.1 68 63.2
BolC7t40871H Brassica oleracea HOM05D003223 ORTHO05D033830 1.3e-08 63.5 38 84.2


User provided reference genes

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