Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 9.1e-193 676.8 354 100.0
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 2.3e-188 662.1 354 98.9
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 3.0e-188 661.8 354 97.7
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 3.0e-188 661.8 354 97.7
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 6.7e-188 660.6 354 97.7
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.0e-183 646.7 354 94.4
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 6.8e-180 634.0 361 93.9
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 9.8e-179 630.2 348 93.1
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 4.8e-178 627.9 347 93.4
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 8.3e-178 627.1 347 93.1
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 1.1e-177 626.7 347 93.1
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 1.1e-177 626.7 347 93.1
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 1.8e-177 625.9 347 92.8
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 7.7e-176 620.5 354 91.0
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.6e-173 611.7 355 90.1
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 2.0e-171 605.9 354 88.7
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 2.0e-168 595.9 354 87.0
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.0e-167 593.6 351 87.2
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 2.3e-167 592.4 349 87.7
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.5e-166 589.7 347 87.3
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 5.6e-166 587.8 347 87.0
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 3.0e-164 582.0 331 90.6
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 2.0e-163 579.3 330 88.8
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 3.4e-163 578.6 330 88.2
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 4.9e-162 574.7 346 84.4
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 4.9e-162 574.7 335 87.5
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 8.3e-162 573.9 344 84.6
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.4e-161 573.2 346 84.4
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 4.1e-161 571.6 346 84.7
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 5.4e-161 571.2 330 87.0
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.2e-160 570.1 328 86.0
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 2.7e-160 568.9 333 86.5
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.0e-159 567.0 341 83.6
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.3e-159 566.6 330 87.3
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 2.3e-159 565.8 329 85.4
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 3.0e-159 565.5 344 83.4
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 5.0e-159 564.7 340 83.2
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 5.0e-159 564.7 328 85.7
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 8.6e-159 563.9 349 83.1
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.5e-158 563.1 346 83.2
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 2.5e-158 562.4 327 85.9
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 4.3e-158 561.6 351 82.1
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.6e-158 561.2 338 83.7
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 7.3e-158 560.8 354 81.1
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 7.3e-158 560.8 349 81.9
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 7.3e-158 560.8 341 83.6
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.2e-157 560.1 338 83.7
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 1.2e-157 560.1 346 82.9
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.6e-157 559.7 343 82.8
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 1.6e-157 559.7 351 80.6
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 2.1e-157 559.3 328 85.7
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.8e-157 558.9 349 80.5
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 4.7e-157 558.1 349 82.5
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 4.7e-157 558.1 328 84.8
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 6.2e-157 557.8 338 82.5
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 8.0e-157 557.4 327 83.8
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 8.0e-157 557.4 346 82.7
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 1.8e-156 556.2 340 82.1
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 1.8e-156 556.2 334 84.1
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 8.9e-156 553.9 327 83.2
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 1.2e-155 553.5 348 81.6
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.5e-155 553.1 348 81.6
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 2.0e-155 552.7 326 83.7
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 7.5e-155 550.8 328 85.1
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 9.8e-155 550.4 335 82.4
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 9.8e-155 550.4 335 82.4
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 1.3e-154 550.1 335 82.4
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.3e-154 550.1 330 83.0
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.7e-154 549.7 324 84.6
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.9e-154 548.9 347 81.0
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.9e-154 548.9 347 81.0
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 3.7e-154 548.5 328 83.5
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.4e-154 547.7 347 81.0
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.1e-153 547.0 336 81.5
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 1.4e-153 546.6 333 83.2
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.0e-152 542.7 365 77.8
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 4.6e-152 541.6 383 74.2
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 6.0e-152 541.2 356 77.8
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 6.0e-152 541.2 327 83.2
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 6.6e-151 537.7 368 75.0
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 1.9e-150 536.2 349 82.2
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 4.3e-150 535.0 328 81.1
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 9.5e-150 533.9 346 78.6
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 9.5e-150 533.9 345 80.0
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 3.6e-149 531.9 332 80.7
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 4.7e-149 531.6 346 78.3
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 4.7e-149 531.6 350 80.0
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 6.2e-149 531.2 353 77.9
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.8e-148 529.6 342 77.8
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 6.8e-148 527.7 334 80.5
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 6.8e-148 527.7 328 79.0
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 1.2e-147 526.9 351 78.1
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.0e-147 526.2 336 78.6
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 2.6e-147 525.8 334 79.6
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 4.4e-147 525.0 330 79.4
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 7.5e-147 524.2 370 73.5
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 9.9e-147 523.9 332 79.2
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 2.2e-146 522.7 328 79.3
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 3.7e-146 521.9 350 76.9
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 1.4e-145 520.0 354 76.3
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 3.5e-144 515.4 301 84.7
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.3e-143 513.5 404 68.1
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 2.3e-143 512.7 297 86.9
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.9e-142 509.6 377 71.9
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.9e-142 509.6 347 76.4
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.7e-138 496.5 334 76.0
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 9.2e-137 490.7 353 73.7
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 6.0e-136 488.0 324 72.8
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.0e-135 487.3 331 75.5
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.0e-135 485.7 400 66.0
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 5.1e-135 485.0 352 76.4
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 6.6e-135 484.6 359 69.6
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 4.7e-133 478.4 288 82.6
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 1.7e-127 459.9 334 73.7
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 2.1e-125 453.0 266 87.2
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 4.8e-125 451.8 338 66.6
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.4e-124 450.3 342 67.5
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.7e-122 443.4 328 68.6
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 2.9e-122 442.6 309 73.5
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 4.9e-122 441.8 328 68.3
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 5.4e-121 438.3 317 69.4
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 9.3e-121 437.6 334 65.9
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 3.5e-120 435.6 302 71.9
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.7e-119 431.4 365 64.1
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 4.3e-118 428.7 334 65.0
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 5.6e-118 428.3 287 77.4
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.3e-117 427.2 260 82.3
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 2.1e-112 409.8 335 60.9
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 4.6e-112 408.7 252 81.7
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 7.4e-110 401.4 327 66.7
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 9.0e-108 394.4 246 82.5
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 3.8e-106 389.0 257 77.0
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 4.9e-106 388.7 246 80.1
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-104 383.6 368 57.6
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.9e-104 381.3 273 71.1
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 5.7e-102 375.2 300 63.0
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.7e-101 372.5 274 66.8
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.7e-101 372.5 246 75.2
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 6.9e-100 368.2 356 59.8
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.2e-98 363.2 233 77.3
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.9e-98 362.8 246 76.0
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 4.6e-96 355.5 320 57.8
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.0e-91 340.1 199 86.9
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 6.5e-74 282.0 285 58.6
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.8e-71 273.9 203 71.9
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 9.1e-60 235.0 328 43.6
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.3e-58 231.1 161 68.9
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 3.6e-56 223.0 158 70.9
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.6e-54 216.9 138 79.7
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 2.4e-52 210.3 134 77.6
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 5.4e-52 209.1 251 52.2
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 2.7e-51 206.8 326 43.9
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.2e-48 198.0 129 78.3
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 5.4e-44 182.6 236 41.5
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 6.2e-40 169.1 217 45.6
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.7e-37 159.8 104 74.0
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 1.2e-35 154.8 88 81.8
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 2.7e-35 153.7 106 68.9
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.3e-34 151.4 96 82.3
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.3e-33 146.7 97 74.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 4.3e-33 146.4 110 70.9
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 7.3e-33 145.6 101 70.3
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.4e-28 131.3 189 49.2
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 5.4e-28 129.4 76 81.6
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 5.6e-25 119.4 85 65.9
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 4.7e-24 116.3 76 77.6
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.4e-21 105.9 73 64.4
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 2.1e-19 100.9 73 72.6
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 6.0e-19 99.4 82 64.6
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 6.0e-19 99.4 78 61.5
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 2.3e-18 97.4 62 77.4
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.5e-17 94.7 76 60.5
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 2.1e-16 90.9 78 67.9
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 8.1e-08 62.4 50 62.0


User provided reference genes

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