Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 2.7e-277 958.0 473 100.0
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.7e-258 895.6 473 94.7
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 5.2e-236 820.8 482 87.1
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 9.8e-235 816.6 476 86.3
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.1e-220 770.0 500 80.6
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 8.1e-213 743.8 502 77.9
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.4e-209 733.0 503 77.1
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 3.1e-204 715.3 405 88.9
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 4.0e-204 714.9 485 76.9
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.6e-200 703.0 486 76.1
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 3.5e-200 701.8 486 76.1
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 3.5e-200 701.8 486 76.1
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.9e-199 698.4 457 79.0
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.4e-196 689.1 481 75.7
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 2.6e-195 685.6 480 75.2
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.2e-192 676.8 415 82.9
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 8.7e-191 670.6 416 81.7
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.0e-186 657.1 497 67.8
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.8e-183 646.4 501 67.1
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 5.1e-183 644.8 499 65.5
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 9.0e-180 634.0 499 64.5
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.8e-170 602.1 443 67.7
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 8.8e-167 590.9 499 63.1
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.3e-162 577.0 414 69.6
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.9e-161 573.2 487 63.2
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.9e-161 573.2 487 63.2
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.9e-161 573.2 487 63.2
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.6e-160 570.1 489 63.2
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 3.6e-160 568.9 489 63.0
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.9e-159 565.5 406 70.2
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 7.5e-150 534.6 498 56.8
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 2.9e-146 522.7 526 52.1
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 5.0e-146 521.9 527 53.1
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.9e-145 520.0 464 58.0
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 2.5e-145 519.6 462 57.8
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 4.2e-145 518.8 489 55.8
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 9.4e-145 517.7 513 53.2
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 9.4e-145 517.7 515 52.6
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 2.1e-144 516.5 515 52.6
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.7e-144 516.2 510 54.3
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.7e-144 515.4 462 57.6
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.0e-143 514.2 515 53.4
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 4.0e-143 512.3 514 53.3
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.5e-142 510.4 513 52.8
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.6e-142 509.6 446 59.2
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 3.4e-142 509.2 522 52.5
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 3.4e-142 509.2 515 52.4
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 4.4e-142 508.8 513 52.8
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 5.7e-142 508.4 461 57.3
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 7.5e-142 508.1 495 53.9
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.3e-141 507.3 430 59.5
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.7e-141 506.9 469 54.6
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.7e-141 506.9 469 54.6
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.7e-141 506.9 514 52.9
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.8e-141 506.1 512 52.5
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 6.3e-141 505.0 515 52.8
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 6.3e-141 505.0 508 52.4
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.8e-140 503.4 508 52.0
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.4e-140 503.1 453 55.2
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 5.4e-140 501.9 457 56.0
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-139 500.7 524 51.7
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.2e-139 500.7 514 53.3
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.6e-139 500.4 458 55.5
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.5e-139 499.2 421 59.4
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.5e-139 499.2 449 57.0
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.0e-138 497.7 421 59.1
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.0e-138 497.7 423 59.1
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-138 497.3 513 51.1
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.3e-138 497.3 469 55.4
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.9e-138 496.1 459 54.5
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 6.5e-138 495.0 470 54.3
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 4.2e-137 492.3 520 51.0
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 5.5e-137 491.9 492 54.1
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.2e-136 490.7 494 51.4
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.1e-136 490.0 423 58.6
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 4.0e-135 485.7 484 53.9
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 8.9e-135 484.6 459 53.6
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.6e-134 483.0 460 54.8
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.3e-133 480.7 441 56.9
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.7e-133 480.3 441 56.7
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.8e-133 479.6 396 59.6
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 6.3e-133 478.4 419 58.5
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 8.3e-133 478.0 487 53.4
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 1.1e-132 477.6 483 53.2
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.1e-132 477.6 407 58.5
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.4e-132 477.2 451 53.0
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.8e-132 476.9 337 70.9
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.4e-132 476.5 470 53.4
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 3.1e-132 476.1 411 57.9
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 3.5e-131 472.6 469 53.3
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.7e-130 470.3 431 55.7
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 2.9e-130 469.5 512 49.8
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 5.0e-130 468.8 434 54.6
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 8.6e-130 468.0 431 55.5
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.5e-129 467.2 451 53.7
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.9e-129 466.8 439 54.7
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.3e-129 466.1 438 56.2
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 5.6e-129 465.3 493 51.3
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.2e-128 464.2 414 55.3
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 2.8e-128 463.0 470 52.3
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 6.1e-128 461.8 470 52.1
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.0e-127 461.1 435 54.7
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.8e-127 460.3 436 55.7
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 3.0e-127 459.5 436 54.8
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 4.0e-127 459.1 438 53.9
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 8.9e-127 458.0 440 55.0
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.2e-126 457.6 453 53.2
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.2e-126 457.6 456 52.0
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.5e-126 457.2 438 53.9
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.5e-126 457.2 391 58.6
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 3.4e-126 456.1 457 51.4
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 4.4e-126 455.7 418 53.6
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 7.5e-126 454.9 422 54.5
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 7.5e-126 454.9 438 54.1
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.7e-125 453.8 436 54.4
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 2.2e-125 453.4 515 49.5
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.4e-124 450.7 445 52.6
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 5.4e-124 448.7 481 50.3
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 2.7e-123 446.4 429 54.8
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 4.6e-123 445.7 464 51.9
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 6.0e-123 445.3 380 58.7
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.7e-122 443.7 415 55.2
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 1.1e-121 441.0 486 49.6
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 8.0e-120 434.9 441 51.2
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.1e-119 434.5 395 56.2
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.4e-119 434.1 409 54.3
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 5.2e-119 432.2 489 48.7
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 4.4e-118 429.1 767 36.9
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 7.5e-118 428.3 424 53.1
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.1e-116 424.5 429 50.8
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 3.5e-115 419.5 385 54.8
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.3e-114 417.5 493 47.7
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.9e-114 416.0 412 51.9
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 6.6e-114 415.2 415 50.8
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 7.3e-113 411.8 410 54.4
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 2.3e-111 406.8 320 62.5
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 4.0e-111 406.0 417 51.1
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 1.2e-110 404.4 203 96.1
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.6e-110 403.3 467 47.8
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 2.9e-109 399.8 401 51.4
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 5.4e-108 395.6 396 52.8
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.0e-106 391.3 338 57.7
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 3.0e-106 389.8 455 47.0
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.1e-105 387.9 415 48.0
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 4.3e-105 386.0 624 38.3
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.1e-100 371.3 374 53.2
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 1.4e-100 370.9 400 50.0
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 1.1e-73 281.6 303 48.2
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.2e-72 275.8 221 62.0
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.4e-68 264.6 248 54.4
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 3.0e-66 256.9 216 67.1
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 2.1e-59 234.2 310 43.9
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.9e-55 219.2 199 57.8
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.7e-53 214.5 249 48.2
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.7e-51 207.2 273 43.6
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 7.9e-51 205.7 294 41.5
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.5e-46 191.4 270 40.0
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 5.0e-45 186.4 467 32.5
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.1e-39 168.7 435 33.3
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.7e-37 161.4 185 51.4
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 6.1e-35 152.9 261 38.7
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 2.3e-26 124.4 277 32.1
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 1.8e-23 114.8 117 49.6
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 5.4e-23 113.2 80 60.0
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-21 107.8 121 47.9
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.1e-20 105.5 105 51.4
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 2.1e-19 101.3 215 30.7
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.5e-14 84.0 102 44.1
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.5e-12 78.6 75 49.3
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.4e-09 67.4 47 68.1
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.8e-09 66.6 110 43.6
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 2.9e-08 64.3 321 24.3
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 1.2e-06 58.9 74 43.2


User provided reference genes

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