Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 4.9e-79 297.7 150 100.0
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 4.9e-79 297.7 150 100.0
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 3.0e-76 288.5 150 96.7
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 3.0e-76 288.5 150 96.7
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 6.4e-71 270.8 150 92.7
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 8.3e-63 243.8 129 95.3
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.1e-59 233.4 150 83.3
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 1.2e-58 229.9 149 81.2
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 1.4e-57 226.5 149 81.9
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 1.4e-57 226.5 149 81.9
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 1.8e-57 226.1 149 81.2
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 2.1e-53 212.6 149 76.5
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 1.9e-51 206.1 152 76.3
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 2.5e-51 205.7 150 76.0
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.2e-50 203.4 153 74.5
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 2.1e-50 202.6 150 75.3
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 5.2e-49 198.0 150 72.7
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 6.9e-49 197.6 148 73.6
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 2.0e-48 196.1 121 86.0
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 8.4e-47 190.7 147 72.1
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 1.6e-45 186.4 150 69.3
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 3.5e-45 185.3 150 72.7
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 1.0e-44 183.7 157 66.2
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 3.9e-44 181.8 150 69.3
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 2.9e-31 139.0 122 66.4
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.5e-27 126.7 149 56.4
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 1.6e-26 123.2 153 53.6
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.6e-26 123.2 149 54.4
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.6e-26 123.2 153 54.2
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.8e-26 122.5 139 56.1
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 1.1e-25 120.6 152 50.0
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 3.1e-25 119.0 116 58.6
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 3.1e-25 119.0 153 49.0
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 3.1e-25 119.0 153 49.0
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 3.1e-25 119.0 153 49.0
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 9.0e-25 117.5 147 53.7
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 3.4e-24 115.5 151 51.7
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 1.3e-23 113.6 116 53.4
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 1.3e-23 113.6 116 53.4
BcaC02g12758 Brassica carinata HOM05D002974 ORTHO05D002992 2.2e-23 112.8 151 47.7
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 6.5e-23 111.3 116 56.0
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 8.4e-23 110.9 116 55.2
AT2G41180 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 1.4e-22 110.2 119 55.5
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 3.3e-19 99.0 141 50.4
Carub.0004s2349 Capsella rubella HOM05D002974 ORTHO05D002992 3.7e-18 95.5 120 51.7
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 2.1e-13 79.7 58 77.6
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 2.1e-13 79.7 58 77.6
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.1e-11 73.9 128 42.2
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.4e-09 67.0 123 43.1
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 2.4e-09 66.2 156 35.9
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 2.0e-08 63.2 110 43.6
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 2.0e-08 63.2 47 70.2
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 2.6e-08 62.8 74 54.1
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 3.4e-08 62.4 74 54.1
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 4.5e-08 62.0 143 37.1
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 5.9e-08 61.6 136 39.0
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 5.9e-08 61.6 127 36.2
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.0e-07 60.8 152 38.8
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 1.0e-07 60.8 121 40.5
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.3e-07 60.5 147 38.8
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 1.3e-07 60.5 74 48.6
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.7e-07 60.1 64 60.9
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.7e-07 60.1 54 57.4
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 1.7e-07 60.1 138 35.5
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 2.2e-07 59.7 74 47.3
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 2.9e-07 59.3 74 51.4
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.8e-07 58.9 130 37.7
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 3.8e-07 58.9 53 66.0
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 3.8e-07 58.9 138 37.7
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.0e-07 58.5 154 37.0
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 6.5e-07 58.2 44 65.9
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 6.5e-07 58.2 44 65.9
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 6.5e-07 58.2 70 52.9
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 8.5e-07 57.8 51 62.7
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 8.5e-07 57.8 64 60.9
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 8.5e-07 57.8 157 35.7
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.1e-06 57.4 55 60.0
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.1e-06 57.4 46 67.4
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.1e-06 57.4 136 38.2
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 1.1e-06 57.4 131 35.1
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.4e-06 57.0 49 57.1
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.4e-06 57.0 49 57.1
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.4e-06 57.0 65 52.3
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.4e-06 57.0 118 37.3
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.4e-06 57.0 157 35.0
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.4e-06 57.0 118 37.3
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 1.9e-06 56.6 139 38.1
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.9e-06 56.6 49 57.1
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 1.9e-06 56.6 53 60.4
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 2.5e-06 56.2 132 36.4
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 3.2e-06 55.8 61 60.7
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 3.2e-06 55.8 54 61.1
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 3.2e-06 55.8 62 58.1
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 3.2e-06 55.8 131 34.4
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 3.2e-06 55.8 135 35.6
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.2e-06 55.8 121 33.9
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 4.2e-06 55.5 49 65.3
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 4.2e-06 55.5 73 49.3
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.2e-06 55.5 132 35.6
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 4.2e-06 55.5 130 35.4
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 5.5e-06 55.1 119 40.3
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 7.2e-06 54.7 33 84.8
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 7.2e-06 54.7 124 38.7
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 7.2e-06 54.7 139 39.6
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 7.2e-06 54.7 60 51.7
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 7.2e-06 54.7 138 33.3
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 9.4e-06 54.3 73 47.9
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 9.4e-06 54.3 132 35.6
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 9.4e-06 54.3 43 65.1
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 9.4e-06 54.3 47 63.8
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 9.4e-06 54.3 49 61.2


User provided reference genes

Program Settings