Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p45480 Brassica napus HOM05D003802 ORTHO05D020190 4.9e-91 337.8 173 100.0
A06p28940 Brassica napus HOM05D003802 ORTHO05D020190 1.1e-74 283.5 185 83.8
BraA06t25839Z Brassica rapa HOM05D003802 ORTHO05D020190 1.1e-74 283.5 185 83.8
A09p44980 Brassica napus HOM05D003802 ORTHO05D004829 1.3e-46 190.3 106 92.5
BraA09t39958Z Brassica rapa HOM05D003802 ORTHO05D004829 1.3e-46 190.3 106 92.5
BcaB01g00413 Brassica carinata HOM05D003802 ORTHO05D004829 2.8e-46 189.1 106 91.5
BcaB01g00473 Brassica carinata HOM05D003802 ORTHO05D004829 4.8e-46 188.3 106 91.5
C08p27060 Brassica napus HOM05D003802 ORTHO05D004829 4.8e-46 188.3 106 91.5
BolC8t50321H Brassica oleracea HOM05D003802 ORTHO05D004829 4.8e-46 188.3 106 91.5
BcaC02g09302 Brassica carinata HOM05D003802 ORTHO05D004829 4.1e-45 185.3 106 88.7
BolC4t25697H Brassica oleracea HOM05D003802 ORTHO05D004829 4.1e-45 185.3 106 88.7
A04p07490 Brassica napus HOM05D003802 ORTHO05D004829 2.2e-43 179.5 106 85.8
BraA04t16444Z Brassica rapa HOM05D003802 ORTHO05D004829 2.2e-43 179.5 106 85.8
Sp5g10430 Schrenkiella parvula HOM05D003802 ORTHO05D004829 3.8e-43 178.7 106 84.9
BcaC05g29883 Brassica carinata HOM05D003802 ORTHO05D004829 4.2e-42 175.3 96 91.7
C04p41140 Brassica napus HOM05D003802 ORTHO05D004829 7.9e-41 171.0 97 88.7
BcaB02g08601 Brassica carinata HOM05D003802 ORTHO05D004829 2.3e-40 169.5 106 83.0
Thhalv10010388m.g Eutrema salsugineum HOM05D003802 ORTHO05D004829 2.3e-40 169.5 106 80.2
AL5G32300 Arabidopsis lyrata HOM05D003802 ORTHO05D004829 5.1e-40 168.3 106 80.2
AT3G51840 Arabidopsis thaliana HOM05D003802 ORTHO05D004829 3.3e-39 165.6 106 79.2
Carub.0005s1819 Capsella rubella HOM05D003802 ORTHO05D004829 1.3e-38 163.7 107 80.4
THA.LOC104805957 Tarenaya hassleriana HOM05D003802 ORTHO05D004829 1.4e-37 160.2 106 75.5
CARHR161470 Cardamine hirsuta HOM05D003802 ORTHO05D004829 2.6e-36 156.0 106 74.5
Aa31LG5G23700 Aethionema arabicum HOM05D003802 ORTHO05D004829 1.3e-35 153.7 106 73.6
Eucgr.A00529 Eucalyptus grandis HOM05D003802 ORTHO05D004829 1.3e-35 153.7 106 72.6
BolC5t35016H Brassica oleracea HOM05D003802 ORTHO05D004829 5.0e-35 151.8 78 94.9
BcaC04g20315 Brassica carinata HOM05D003802 ORTHO05D004829 1.9e-34 149.8 118 72.9
BraA09t40009Z Brassica rapa HOM05D003802 ORTHO05D004829 1.9e-34 149.8 91 85.7
BcaC06g36577 Brassica carinata HOM05D003802 ORTHO05D004829 9.4e-34 147.5 81 91.4
BolC5t35018H Brassica oleracea HOM05D003802 ORTHO05D004829 2.1e-33 146.4 81 91.4
BraA03t15488Z Brassica rapa HOM05D003802 ORTHO05D020190 2.7e-33 146.0 126 68.3
BcaC05g27741 Brassica carinata HOM05D003802 ORTHO05D004829 3.6e-33 145.6 81 91.4
C05p37270 Brassica napus HOM05D003802 ORTHO05D004829 3.6e-33 145.6 81 91.4
Ciclev10011934m.g Citrus clementina HOM05D003802 ORTHO05D004829 3.6e-33 145.6 106 67.9
Manes.08G093200 Manihot esculenta HOM05D003802 ORTHO05D004829 3.6e-33 145.6 106 67.9
C09p45050 Brassica napus HOM05D003802 ORTHO05D020190 1.4e-32 143.7 109 75.2
Haze_21019 Corylus avellana HOM05D003802 ORTHO05D004829 1.8e-32 143.3 106 64.2
Lalb_Chr12g0207031 Lupinus albus HOM05D003802 ORTHO05D004829 3.9e-32 142.1 106 67.0
Rhsim04G0127300 Rhododendron simsii HOM05D003802 ORTHO05D004829 3.9e-32 142.1 106 67.0
CSS0028267 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 5.1e-32 141.7 106 67.0
TAR369G0012 Trochodendron aralioides HOM05D003802 ORTHO05D004829 5.1e-32 141.7 106 67.9
MSTRG.5566 Avicennia marina HOM05D003802 ORTHO05D004829 1.1e-31 140.6 106 67.9
Hma1.2p1_0362F.1_g136390 Hydrangea macrophylla HOM05D003802 ORTHO05D004829 1.1e-31 140.6 106 66.0
Cfa017192 Carpinus fangiana HOM05D003802 ORTHO05D004829 1.5e-31 140.2 106 63.2
Aa31LG10G9050 Aethionema arabicum HOM05D003802 ORTHO05D004829 2.6e-31 139.4 140 59.3
CSS0036674 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 2.6e-31 139.4 98 67.3
CSS0032028 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 3.3e-31 139.0 93 69.9
Lj3g0007770 Lotus japonicus HOM05D003802 ORTHO05D004829 4.4e-31 138.7 106 63.2
PGSC0003DMG400011023 Solanum tuberosum HOM05D003802 ORTHO05D004829 4.4e-31 138.7 93 72.0
Nitab4.5_0000119g0070 Nicotiana tabacum HOM05D003802 ORTHO05D004829 7.4e-31 137.9 106 66.0
Lj3C951G1 Lonicera japonica HOM05D003802 ORTHO05D004829 9.7e-31 137.5 97 70.1
Peaxi162Scf00009g00163 Petunia axillaris HOM05D003802 ORTHO05D004829 9.7e-31 137.5 94 71.3
Solyc10g085200.2 Solanum lycopersicum HOM05D003802 ORTHO05D004829 1.7e-30 136.7 93 72.0
Atru.chr8.2601 Acer truncatum HOM05D003802 ORTHO05D004829 2.2e-30 136.3 106 61.3
Dinv09291 Davidia involucrata HOM05D003802 ORTHO05D004829 2.2e-30 136.3 106 64.2
SGA_v2.0_scaffold95G28857 Striga asiatica HOM05D003802 ORTHO05D004829 2.2e-30 136.3 104 66.3
Peaxi162Scf00014g00222 Petunia axillaris HOM05D003802 ORTHO05D004829 2.8e-30 136.0 106 65.1
PGR031G1102 Punica granatum HOM05D003802 ORTHO05D004829 2.8e-30 136.0 106 65.1
TWI53G0442 Tripterygium wilfordii HOM05D003802 ORTHO05D004829 2.8e-30 136.0 102 63.7
Sopen10g034670 Solanum pennellii HOM05D003802 ORTHO05D004829 3.7e-30 135.6 93 72.0
TWI74G0069 Tripterygium wilfordii HOM05D003802 ORTHO05D004829 3.7e-30 135.6 102 65.7
EL10Ac5g12547 Beta vulgaris HOM05D003802 ORTHO05D004829 4.8e-30 135.2 102 67.6
Nn2g13152 Nelumbo nucifera HOM05D003802 ORTHO05D004829 4.8e-30 135.2 107 63.6
DCAR_015400 Daucus carota HOM05D003802 ORTHO05D004829 6.3e-30 134.8 106 64.2
Migut.J00147 Erythranthe guttata HOM05D003802 ORTHO05D004829 6.3e-30 134.8 106 67.9
Sopen10g028240 Solanum pennellii HOM05D003802 ORTHO05D004829 6.3e-30 134.8 106 65.1
CSS0000012 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 8.2e-30 134.4 102 63.7
Solyc10g076600.2 Solanum lycopersicum HOM05D003802 ORTHO05D004829 8.2e-30 134.4 106 65.1
GSVIVG01011175001 Vitis vinifera HOM05D003802 ORTHO05D004829 8.2e-30 134.4 102 64.7
Glyma.18G202800 Glycine max HOM05D003802 ORTHO05D004829 1.1e-29 134.0 104 65.4
SalBow5G1244 Salvia bowleyana HOM05D003802 ORTHO05D004829 1.1e-29 134.0 97 72.2
Dinv01494 Davidia involucrata HOM05D003802 ORTHO05D004829 1.4e-29 133.7 102 65.7
Thecc.05G013900 Theobroma cacao HOM05D003802 ORTHO05D004829 1.8e-29 133.3 103 66.0
CAN.G243.8 Capsicum annuum HOM05D003802 ORTHO05D004829 2.4e-29 132.9 93 71.0
Glyma.07G151500 Glycine max HOM05D003802 ORTHO05D004829 2.4e-29 132.9 99 65.7
Prupe.6G279200 Prunus persica HOM05D003802 ORTHO05D004829 3.1e-29 132.5 99 64.6
CAN.G823.1 Capsicum annuum HOM05D003802 ORTHO05D004829 4.1e-29 132.1 93 68.8
HanXRQChr11g0331731 Helianthus annuus HOM05D003802 ORTHO05D004829 4.1e-29 132.1 106 63.2
QL07p035231 Quercus lobata HOM05D003802 ORTHO05D004829 4.1e-29 132.1 106 63.2
SalBow5G2900 Salvia bowleyana HOM05D003802 ORTHO05D004829 4.1e-29 132.1 106 66.0
Cpa.g.sc11.100 Carica papaya HOM05D003802 ORTHO05D004829 5.3e-29 131.7 96 65.6
SalBow5G3730 Salvia bowleyana HOM05D003802 ORTHO05D004829 5.3e-29 131.7 106 66.0
CSS0006548 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 9.1e-29 131.0 106 60.4
Nitab4.5_0004107g0050 Nicotiana tabacum HOM05D003802 ORTHO05D004829 1.2e-28 130.6 94 70.2
PGSC0003DMG401019176 Solanum tuberosum HOM05D003802 ORTHO05D004829 1.2e-28 130.6 106 63.2
FAN05G2463 Fragaria x ananassa HOM05D003802 ORTHO05D004829 1.5e-28 130.2 92 69.6
BcaC04g20180 Brassica carinata HOM05D003802 ORTHO05D004829 3.5e-28 129.0 103 72.8
Potri.006G101800 Populus trichocarpa HOM05D003802 ORTHO05D004829 4.5e-28 128.6 97 66.0
Potri.016G118000 Populus trichocarpa HOM05D003802 ORTHO05D004829 4.5e-28 128.6 99 62.6
Hund10994 Selenicereus undatus HOM05D003802 ORTHO05D004829 4.5e-28 128.6 98 68.4
Sc07g0006670 Simmondsia chinensis HOM05D003802 ORTHO05D004829 4.5e-28 128.6 91 70.3
CiPaw.10G157200 Carya illinoinensis HOM05D003802 ORTHO05D004829 5.9e-28 128.3 100 60.0
MD04G1155700 Malus domestica HOM05D003802 ORTHO05D004829 5.9e-28 128.3 99 63.6
Medtr7g068850 Medicago truncatula HOM05D003802 ORTHO05D004829 5.9e-28 128.3 100 64.0
FvH4_6g11280 Fragaria vesca HOM05D003802 ORTHO05D004829 7.7e-28 127.9 92 68.5
FAN14G2331 Fragaria x ananassa HOM05D003802 ORTHO05D004829 7.7e-28 127.9 92 68.5
FAN14G4713 Fragaria x ananassa HOM05D003802 ORTHO05D004829 7.7e-28 127.9 92 68.5
Phvul.010G076000 Phaseolus vulgaris HOM05D003802 ORTHO05D004829 7.7e-28 127.9 106 60.4
Ciclev10013617m.g Citrus clementina HOM05D003802 ORTHO05D004829 1.0e-27 127.5 98 66.3
MELO3C009153.2 Cucumis melo HOM05D003802 ORTHO05D004829 1.0e-27 127.5 107 60.7
Glyma.03G056400 Glycine max HOM05D003802 ORTHO05D004829 1.0e-27 127.5 110 58.2
Gohir.D09G161600 Gossypium hirsutum HOM05D003802 ORTHO05D004829 1.3e-27 127.1 106 64.2
CsaV3_3G033630 Cucumis sativus L. HOM05D003802 ORTHO05D004829 1.7e-27 126.7 97 64.9
Gorai.006G183300 Gossypium raimondii HOM05D003802 ORTHO05D004829 1.7e-27 126.7 106 64.2
RcHm_v2.0_Chr3g0462821 Rosa chinensis HOM05D003802 ORTHO05D004829 1.7e-27 126.7 106 62.3
Sabra16G0114200 Salix brachista HOM05D003802 ORTHO05D004829 2.2e-27 126.3 94 66.0
Sed0011339 Sechium edule HOM05D003802 ORTHO05D004829 2.2e-27 126.3 107 60.7
Nitab4.5_0000770g0030 Nicotiana tabacum HOM05D003802 ORTHO05D004829 2.9e-27 125.9 119 57.1
arahy.Tifrunner.gnm1.ann1.0003EL Arachis hypogaea HOM05D003802 ORTHO05D004829 5.0e-27 125.2 97 63.9
arahy.Tifrunner.gnm1.ann1.DW8YXR Arachis hypogaea HOM05D003802 ORTHO05D004829 5.0e-27 125.2 97 63.9
AUR62030803 Chenopodium quinoa HOM05D003802 ORTHO05D004829 6.5e-27 124.8 103 61.2
MBI03_g24259_MAGBIO Magnolia biondii HOM05D003802 ORTHO05D004829 6.5e-27 124.8 107 61.7
COL.COLO4_14514 Corchorus olitorius HOM05D003802 ORTHO05D004829 8.5e-27 124.4 99 64.6
Ciclev10013381m.g Citrus clementina HOM05D003802 ORTHO05D004829 1.1e-26 124.0 107 58.9
ClCG10G022250 Citrullus lanatus HOM05D003802 ORTHO05D004829 1.5e-26 123.6 117 57.3
CiPaw.09G210700 Carya illinoinensis HOM05D003802 ORTHO05D004829 1.9e-26 123.2 140 50.0
Lj1g0026208 Lotus japonicus HOM05D003802 ORTHO05D004829 1.9e-26 123.2 88 68.2
CSS0018174 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 2.5e-26 122.9 90 65.6
Gohir.A09G166000 Gossypium hirsutum HOM05D003802 ORTHO05D004829 2.5e-26 122.9 106 62.3
Cc06_g01200 Coffea canephora HOM05D003802 ORTHO05D004829 3.2e-26 122.5 102 58.8
Oeu038764.2 Olea europaea HOM05D003802 ORTHO05D004829 4.2e-26 122.1 113 60.2
ECA236G0063 Erigeron canadensis HOM05D003802 ORTHO05D004829 9.4e-26 120.9 107 60.7
Psat3g127160 Pisum sativum HOM05D003802 ORTHO05D004829 8.0e-25 117.9 88 67.0
TPR.G8416 Trifolium pratense HOM05D003802 ORTHO05D004829 8.0e-25 117.9 88 64.8
Lalb_Chr03g0043201 Lupinus albus HOM05D003802 ORTHO05D004829 1.4e-24 117.1 107 55.1
CDE06G0316 Ceratophyllum demersum HOM05D003802 ORTHO05D004829 1.8e-24 116.7 101 56.4
Lsat_1_v5_gn_8_101681 Lactuca sativa HOM05D003802 ORTHO05D004829 1.5e-23 113.6 103 56.3
Aqoxy4G02528 Aquilegia oxysepala HOM05D003802 ORTHO05D004829 3.3e-23 112.5 106 55.7
Zm00001eb282120 Zea mays HOM05D003802 ORTHO05D004829 4.4e-23 112.1 84 66.7
Gohir.A13G085701 Gossypium hirsutum HOM05D003802 ORTHO05D004829 1.3e-22 110.5 100 60.0
Os01g0159400 Oryza sativa ssp. japonica HOM05D003802 ORTHO05D004829 1.3e-22 110.5 84 65.5
HPP92_006763 Vanilla planifolia HOM05D003802 ORTHO05D004829 1.3e-22 110.5 84 65.5
Gohir.D13G095300 Gossypium hirsutum HOM05D003802 ORTHO05D004829 4.8e-22 108.6 100 59.0
Gorai.001G247400 Gossypium raimondii HOM05D003802 ORTHO05D004829 1.4e-21 107.1 100 58.0
Os05g0163700 Oryza sativa ssp. japonica HOM05D003802 ORTHO05D004829 1.4e-21 107.1 84 63.1
Zm00001eb123620 Zea mays HOM05D003802 ORTHO05D004829 5.3e-21 105.1 84 63.1
PSO339G3660 Papaver somniferum HOM05D003802 ORTHO05D004829 7.0e-21 104.8 106 55.7
PSO384G3434 Papaver somniferum HOM05D003802 ORTHO05D004829 7.0e-21 104.8 106 55.7
ATR0681G264 Amborella trichopoda HOM05D003802 ORTHO05D004829 1.2e-20 104.0 92 55.4
Pp3c10_910 Physcomitrium patens HOM05D003802 ORTHO05D004829 1.7e-19 100.1 84 59.5
AagrBONN_evm.TU.Sc2ySwM_228.349 Anthoceros agrestis HOM05D003802 ORTHO05D004829 2.9e-19 99.4 83 59.0
Nn2g10872 Nelumbo nucifera HOM05D003802 ORTHO05D020190 5.0e-19 98.6 81 64.2
Duzib106G0050 Durio zibethinus HOM05D003802 ORTHO05D004829 8.5e-19 97.8 68 67.6
CBR_g4338 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-18 97.1 100 53.0
SMO118G0494 Selaginella moellendorffii HOM05D003802 ORTHO05D004829 3.2e-18 95.9 84 57.1
Mapoly0037s0018 Marchantia polymorpha HOM05D003802 ORTHO05D004829 4.2e-18 95.5 84 58.3
CSS0035995 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 9.4e-18 94.4 89 55.1
Pp3c3_8340 Physcomitrium patens HOM05D003802 ORTHO05D004829 2.7e-17 92.8 96 49.0
MD12G1170600 Malus domestica HOM05D003802 ORTHO05D004829 4.7e-17 92.0 106 50.9
vmacro08883 Vaccinium macrocarpon HOM05D003802 ORTHO05D004829 4.0e-16 89.0 61 70.5
VMungo0331G1951 Vigna mungo HOM05D003802 ORTHO05D004829 2.0e-15 86.7 61 68.9
Duzib093G0744 Durio zibethinus HOM05D003802 ORTHO05D004829 7.5e-15 84.7 61 68.9
AagrBONN_evm.TU.Sc2ySwM_228.298 Anthoceros agrestis HOM05D003802 ORTHO05D004829 1.7e-14 83.6 73 57.5
Ah.12g058740 Amaranthus hybridus HOM05D003802 ORTHO05D004829 1.8e-13 80.1 181 33.7
Lj3C950G12 Lonicera japonica HOM05D003802 ORTHO05D004829 3.1e-13 79.3 61 68.9
FAN09G1187 Fragaria x ananassa HOM05D003802 ORTHO05D004829 1.0e-11 74.3 51 62.7
MD00G1080100 Malus domestica HOM05D003802 ORTHO05D004829 1.0e-11 74.3 86 53.5
Cre16.g695100 Chlamydomonas reinhardtii HOM05D003802 ORTHO05D004829 6.5e-11 71.6 75 49.3
SEGI_03618 Sequoiadendron giganteum HOM05D003802 ORTHO05D004829 1.2e-09 67.4 61 52.5
BcaC05g29879 Brassica carinata HOM05D003802 ORTHO05D004829 1.2e-07 60.8 93 45.2
Actinidia20743 Actinidia chinensis HOM05D003802 ORTHO05D004829 5.7e-07 58.5 37 73.0


User provided reference genes

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