Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p40230 Brassica napus HOM05D000082 ORTHO05D000038 4.1e-33 144.1 68 100.0
BraA09t39521Z Brassica rapa HOM05D000082 ORTHO05D000038 4.1e-33 144.1 68 100.0
Sp1g21990 Schrenkiella parvula HOM05D000082 ORTHO05D000038 7.2e-22 106.7 71 70.4
BcaB03g14090 Brassica carinata HOM05D000082 ORTHO05D000038 1.4e-20 102.4 71 67.6
BraA07t29083Z Brassica rapa HOM05D000082 ORTHO05D000038 6.8e-20 100.1 71 66.2
A07p13120 Brassica napus HOM05D000082 ORTHO05D000038 8.8e-20 99.8 71 66.2
CARHR025130 Cardamine hirsuta HOM05D000082 ORTHO05D000038 2.6e-19 98.2 71 64.8
AT1G26800 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 4.4e-19 97.4 71 64.8
BcaC06g35120 Brassica carinata HOM05D000082 ORTHO05D000038 4.4e-19 97.4 71 63.4
C07p19610 Brassica napus HOM05D000082 ORTHO05D000038 4.4e-19 97.4 71 63.4
BolC7t42478H Brassica oleracea HOM05D000082 ORTHO05D000038 4.4e-19 97.4 71 63.4
Carub.0001s2417 Capsella rubella HOM05D000082 ORTHO05D000038 1.7e-18 95.5 71 62.0
Thhalv10009887m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 2.8e-18 94.7 72 65.3
AL1G38880 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 3.5e-16 87.8 71 59.2
A08p27550 Brassica napus HOM05D000082 ORTHO05D000038 4.5e-16 87.4 71 62.0
BcaC07g39269 Brassica carinata HOM05D000082 ORTHO05D000038 7.7e-16 86.7 71 60.6
C08p22790 Brassica napus HOM05D000082 ORTHO05D000038 7.7e-16 86.7 71 60.6
BolC8t49915H Brassica oleracea HOM05D000082 ORTHO05D000038 7.7e-16 86.7 71 60.6
BcaB03g12009 Brassica carinata HOM05D000082 ORTHO05D000038 9.4e-14 79.7 66 62.1
Aa31LG7G8320 Aethionema arabicum HOM05D000082 ORTHO05D000038 3.6e-13 77.8 70 55.7
THA.LOC104808712 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 3.6e-13 77.8 71 53.5
GSVIVG01019972001 Vitis vinifera HOM05D000082 ORTHO05D000038 3.7e-10 67.8 69 44.9
THA.LOC104822911 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 4.8e-10 67.4 71 43.7
Duzib268G0080 Durio zibethinus HOM05D000082 ORTHO05D000038 6.3e-10 67.0 70 44.3
Sc04g0008050 Simmondsia chinensis HOM05D000082 ORTHO05D000038 1.4e-09 65.9 67 46.3
PGSC0003DMG400018407 Solanum tuberosum HOM05D000082 ORTHO05D000038 1.4e-09 65.9 73 52.1
Sopen05g003750 Solanum pennellii HOM05D000082 ORTHO05D000038 2.4e-09 65.1 73 50.7
CiPaw.05G134100 Carya illinoinensis HOM05D000082 ORTHO05D000038 3.1e-09 64.7 69 44.9
Gorai.013G086200 Gossypium raimondii HOM05D000082 ORTHO05D000038 3.1e-09 64.7 70 44.3
CSS0049187 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 4.1e-09 64.3 72 45.8
Oeu014035.1 Olea europaea HOM05D000082 ORTHO05D000038 4.1e-09 64.3 73 45.2
Gohir.A13G075300 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.4e-09 63.9 50 54.0
Gohir.D13G075500 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.4e-09 63.9 70 44.3
Duzib251G0205 Durio zibethinus HOM05D000082 ORTHO05D000038 7.0e-09 63.5 50 52.0
COL.COLO4_22956 Corchorus olitorius HOM05D000082 ORTHO05D000038 9.1e-09 63.2 50 54.0
ECA233G0444 Erigeron canadensis HOM05D001838 ORTHO05D001919 9.1e-09 63.2 55 47.3
Duzib248G1345 Durio zibethinus HOM05D000082 ORTHO05D000038 1.2e-08 62.8 50 50.0
Solyc05g007895.1 Solanum lycopersicum HOM05D000082 ORTHO05D000038 1.6e-08 62.4 55 50.9
Lj6P786T60 Lonicera japonica HOM05D000082 ORTHO05D000038 2.0e-08 62.0 71 40.8
Atru.chr11.1776 Acer truncatum HOM05D000082 ORTHO05D000038 2.7e-08 61.6 73 41.1
unitig_22.g6512 Utricularia gibba HOM05D000082 ORTHO05D000038 2.7e-08 61.6 74 43.2
Cc00_g30280 Coffea canephora HOM05D000082 ORTHO05D000038 4.5e-08 60.8 49 53.1
Cc11_g12900 Coffea canephora HOM05D000082 ORTHO05D000038 4.5e-08 60.8 49 53.1
Migut.L01280 Erythranthe guttata HOM05D000082 ORTHO05D000038 4.5e-08 60.8 53 50.9
Thecc.02G344800 Theobroma cacao HOM05D000082 ORTHO05D000038 4.5e-08 60.8 50 48.0
MD16G1071900 Malus domestica HOM05D000082 ORTHO05D000038 5.9e-08 60.5 51 49.0
Nitab4.5_0003995g0030 Nicotiana tabacum HOM05D000082 ORTHO05D000038 5.9e-08 60.5 53 56.6
Ah.03g134950 Amaranthus hybridus HOM05D000082 ORTHO05D000038 7.7e-08 60.1 69 43.5
Cpa.g.sc128.37 Carica papaya HOM05D000082 ORTHO05D000038 7.7e-08 60.1 50 50.0
Manes.01G036200 Manihot esculenta HOM05D000082 ORTHO05D000038 7.7e-08 60.1 72 40.3
Manes.12G105400 Manihot esculenta HOM05D000082 ORTHO05D000038 1.0e-07 59.7 72 43.1
Manes.12G105500 Manihot esculenta HOM05D000082 ORTHO05D000038 1.0e-07 59.7 72 43.1
Potri.008G087200 Populus trichocarpa HOM05D000082 ORTHO05D000038 1.3e-07 59.3 71 40.8
Potri.010G168300 Populus trichocarpa HOM05D000082 ORTHO05D000038 1.3e-07 59.3 71 40.8
Actinidia33202 Actinidia chinensis HOM05D000082 ORTHO05D000038 1.7e-07 58.9 72 43.1
Hma1.2p1_0795F.1_g218930 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 1.7e-07 58.9 72 43.1
Lsat_1_v5_gn_8_52720 Lactuca sativa HOM05D000082 ORTHO05D000038 1.7e-07 58.9 59 47.5
SGA_v2.0_scaffold53G19335 Striga asiatica HOM05D000082 ORTHO05D000038 1.7e-07 58.9 48 45.8
CANSAT64G0227 Cannabis sativa HOM05D000082 ORTHO05D000038 2.3e-07 58.5 54 53.7
AUR62032795 Chenopodium quinoa HOM05D000082 ORTHO05D000038 2.3e-07 58.5 69 44.9
Sabra10G0128100 Salix brachista HOM05D000082 ORTHO05D000038 2.3e-07 58.5 71 39.4
Sc11g0001970 Simmondsia chinensis HOM05D000082 ORTHO05D000038 2.3e-07 58.5 52 51.9
TWI79G0903 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 2.9e-07 58.2 54 53.7
Sabra08G0065000 Salix brachista HOM05D000082 ORTHO05D000038 3.8e-07 57.8 71 39.4
Haze_12003 Corylus avellana HOM05D000082 ORTHO05D000038 5.0e-07 57.4 72 44.4
Manes.05G102000 Manihot esculenta HOM05D000082 ORTHO05D000038 5.0e-07 57.4 72 41.7
Nitab4.5_0000040g0270 Nicotiana tabacum HOM05D000082 ORTHO05D000038 5.0e-07 57.4 53 54.7
RcHm_v2.0_Chr4g0439691 Rosa chinensis HOM05D000082 ORTHO05D000038 5.0e-07 57.4 69 42.0
Sabra06G0061700 Salix brachista HOM05D000470 ORTHO05D000348 5.0e-07 57.4 50 48.0
Cfa008971 Carpinus fangiana HOM05D000082 ORTHO05D000038 6.6e-07 57.0 72 44.4
FAN17G2074 Fragaria x ananassa HOM05D000082 ORTHO05D000038 8.6e-07 56.6 50 52.0
FAN22G1269 Fragaria x ananassa HOM05D000082 ORTHO05D000038 8.6e-07 56.6 50 52.0
Psat2g118960 Pisum sativum HOM05D000082 ORTHO05D000038 8.6e-07 56.6 72 40.3
Sabra06G0130800 Salix brachista HOM05D000082 ORTHO05D000038 8.6e-07 56.6 71 38.0
Ca_04814_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 1.1e-06 56.2 72 40.3
FAN07G0621 Fragaria x ananassa HOM05D000082 ORTHO05D000038 1.1e-06 56.2 69 44.9
Manes.14G113900 Manihot esculenta HOM05D000082 ORTHO05D000038 1.1e-06 56.2 56 48.2
Prupe.1G275700 Prunus persica HOM05D000082 ORTHO05D000038 1.5e-06 55.8 55 47.3
Sed0026117 Sechium edule HOM05D000082 ORTHO05D000038 1.5e-06 55.8 71 40.8
FvH4_4g31250 Fragaria vesca HOM05D000082 ORTHO05D000038 1.9e-06 55.5 69 44.9
FAN12G0656 Fragaria x ananassa HOM05D000082 ORTHO05D000038 1.9e-06 55.5 69 44.9
Lalb_Chr04g0255991 Lupinus albus HOM05D000082 ORTHO05D000038 1.9e-06 55.5 72 37.5
Ah.02g129650 Amaranthus hybridus HOM05D000082 ORTHO05D000038 2.5e-06 55.1 69 40.6
Ciclev10032639m.g Citrus clementina HOM05D000082 ORTHO05D000038 2.5e-06 55.1 74 33.8
Sabra18G0047900 Salix brachista HOM05D000082 ORTHO05D000038 2.5e-06 55.1 71 38.0
Medtr5g041330 Medicago truncatula HOM05D000082 ORTHO05D000038 3.3e-06 54.7 72 37.5
Sabra18G0067700 Salix brachista HOM05D000082 ORTHO05D000038 3.3e-06 54.7 71 36.6
Sabra06G0078700 Salix brachista HOM05D000082 ORTHO05D000038 4.2e-06 54.3 71 36.6
EL10Ac6g13218 Beta vulgaris HOM05D000082 ORTHO05D000038 5.5e-06 53.9 72 41.7
MD13G1071200 Malus domestica HOM05D000082 ORTHO05D000038 5.5e-06 53.9 51 47.1
Medtr5g041310 Medicago truncatula HOM05D000082 ORTHO05D000038 5.5e-06 53.9 49 46.9
QL03p068727 Quercus lobata HOM05D000082 ORTHO05D000038 5.5e-06 53.9 73 39.7
HanXRQChr08g0210911 Helianthus annuus HOM05D000082 ORTHO05D000038 7.2e-06 53.5 54 44.4
Lj2g0016541 Lotus japonicus HOM05D000082 ORTHO05D000038 9.5e-06 53.1 75 37.3
Sabra02G0123700 Salix brachista HOM05D000082 ORTHO05D000038 9.5e-06 53.1 50 46.0
THA.LOC104801803 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 9.5e-06 53.1 50 42.0


User provided reference genes

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