Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 6.6e-36 153.7 87 100.0
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 2.6e-24 115.2 64 100.0
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 2.6e-24 115.2 64 100.0
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 2.6e-24 115.2 64 100.0
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 5.8e-24 114.0 64 98.4
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 5.8e-24 114.0 64 98.4
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 5.8e-24 114.0 64 98.4
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 5.8e-24 114.0 64 98.4
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 7.5e-24 113.6 63 100.0
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 1.7e-23 112.5 63 98.4
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 1.7e-23 112.5 64 96.9
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 3.7e-23 111.3 64 95.3
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 6.4e-23 110.5 65 98.5
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 1.4e-22 109.4 63 95.2
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 1.9e-22 109.0 65 96.9
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 1.9e-22 109.0 64 98.4
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 1.9e-22 109.0 64 98.4
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 5.4e-22 107.5 65 95.4
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 2.7e-21 105.1 64 89.1
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 1.7e-20 102.4 63 87.3
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 1.5e-19 99.4 64 89.1
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 9.5e-19 96.7 64 85.9
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 2.1e-18 95.5 64 85.9
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 4.7e-18 94.4 64 84.4
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 4.7e-18 94.4 64 84.4
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 4.7e-18 94.4 64 84.4
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 6.2e-18 94.0 65 83.1
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 2.4e-17 92.0 63 82.5
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 2.4e-17 92.0 64 84.4
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 2.4e-17 92.0 64 81.2
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.4e-17 92.0 64 82.8
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.4e-17 92.0 64 82.8
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 2.4e-17 92.0 64 82.8
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 3.1e-17 91.7 64 84.4
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 3.1e-17 91.7 64 79.7
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 5.2e-17 90.9 64 82.8
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 5.2e-17 90.9 64 81.2
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 6.8e-17 90.5 65 80.0
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 6.8e-17 90.5 65 80.0
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 6.8e-17 90.5 63 84.1
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 8.9e-17 90.1 64 81.2
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 8.9e-17 90.1 64 82.8
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 1.2e-16 89.7 64 79.7
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.0e-16 89.0 64 78.1
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 2.6e-16 88.6 64 79.7
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.6e-16 88.6 64 82.8
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 3.4e-16 88.2 64 78.1
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 3.4e-16 88.2 64 79.7
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 3.4e-16 88.2 64 81.2
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 4.4e-16 87.8 64 78.1
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 1.3e-15 86.3 63 77.8
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.3e-15 86.3 84 64.3
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 1.7e-15 85.9 62 80.6
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 1.7e-15 85.9 65 81.5
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 2.2e-15 85.5 64 76.6
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 3.8e-15 84.7 64 78.1
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 3.8e-15 84.7 64 78.1
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 3.8e-15 84.7 64 76.6
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 3.8e-15 84.7 64 76.6
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 6.4e-15 84.0 64 76.6
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 8.4e-15 83.6 64 76.6
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 1.9e-14 82.4 64 76.6
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 1.9e-14 82.4 64 76.6
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 1.9e-14 82.4 64 76.6
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 1.9e-14 82.4 64 76.6
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 2.4e-14 82.0 63 76.2
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 2.4e-14 82.0 70 70.0
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 4.2e-14 81.3 64 75.0
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 5.4e-14 80.9 64 75.0
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 1.6e-13 79.3 63 74.6
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 1.6e-13 79.3 64 76.6
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 2.1e-13 79.0 63 73.0
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 2.1e-13 79.0 64 70.3
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 6.0e-13 77.4 64 68.8
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 7.8e-13 77.0 64 71.9
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 1.0e-12 76.6 64 68.8
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 8.7e-12 73.6 64 73.4
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 1.5e-11 72.8 64 65.6
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 1.9e-11 72.4 64 68.8
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 2.5e-11 72.0 51 84.3
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 9.6e-11 70.1 63 71.4
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 3.6e-10 68.2 65 69.2
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 4.8e-10 67.8 51 78.4
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 6.2e-10 67.4 51 74.5
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.4e-09 66.2 65 69.2
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.4e-09 65.5 51 76.5
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 2.4e-09 65.5 51 74.5
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 3.1e-09 65.1 64 68.8
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 4.0e-09 64.7 67 61.2
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 6.9e-09 63.9 51 72.5
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 9.0e-09 63.5 64 64.1
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 1.5e-08 62.8 64 65.6
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 2.0e-08 62.4 64 65.6
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 2.0e-08 62.4 97 48.5
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.6e-08 62.0 64 64.1
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 3.4e-08 61.6 51 70.6
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 4.4e-08 61.2 51 72.5
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 5.8e-08 60.8 51 70.6
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 9.9e-08 60.1 51 70.6
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 9.9e-08 60.1 63 58.7
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 1.3e-07 59.7 64 62.5
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 1.3e-07 59.7 64 60.9
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 2.9e-07 58.5 64 60.9
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.4e-06 55.5 38 81.6
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 4.2e-06 54.7 38 78.9
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 4.2e-06 54.7 64 59.4
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 5.4e-06 54.3 64 59.4


User provided reference genes

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