Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 5.3e-134 481.1 254 100.0
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 4.2e-131 471.5 254 98.0
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 7.4e-128 460.7 254 96.5
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 7.4e-128 460.7 254 96.5
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 3.8e-116 421.8 255 88.6
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 9.3e-115 417.2 255 89.0
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 6.7e-113 411.0 254 86.2
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.9e-112 409.5 254 85.8
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 5.7e-112 407.9 255 83.9
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 7.4e-112 407.5 254 85.8
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 3.7e-111 405.2 255 85.5
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 2.3e-105 386.0 250 81.2
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 2.8e-95 352.4 254 75.2
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.5e-93 346.7 254 74.0
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.9e-91 339.7 256 71.9
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.9e-83 313.2 255 67.5
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.0e-81 305.8 255 66.7
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 4.0e-81 305.4 254 64.2
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 6.7e-81 304.7 255 66.3
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 3.3e-80 302.4 254 63.8
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.3e-80 302.4 255 65.5
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 5.7e-80 301.6 254 65.7
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 7.5e-80 301.2 255 64.7
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 1.1e-78 297.4 255 65.1
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 7.0e-78 294.7 255 65.5
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 1.6e-77 293.5 254 64.2
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 5.0e-76 288.5 254 62.2
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 5.5e-75 285.0 256 64.1
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 2.1e-74 283.1 256 63.7
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 2.1e-74 283.1 256 63.7
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 3.6e-74 282.3 254 61.0
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 1.8e-73 280.0 254 60.2
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 1.8e-73 280.0 259 63.7
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 5.2e-73 278.5 257 63.4
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 1.3e-71 273.9 254 59.4
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 8.3e-71 271.2 258 59.7
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 2.4e-70 269.6 254 60.6
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 2.0e-69 266.5 257 59.1
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 5.5e-67 258.5 257 56.8
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 1.6e-66 256.9 258 56.2
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 4.7e-66 255.4 258 55.8
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 2.3e-65 253.1 252 57.5
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 4.4e-64 248.8 251 55.8
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 7.5e-64 248.1 255 55.7
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 9.8e-64 247.7 255 55.7
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 9.8e-64 247.7 244 56.6
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 9.8e-64 247.7 257 56.0
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 1.7e-63 246.9 257 55.3
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 2.8e-63 246.1 251 55.0
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 2.8e-63 246.1 253 55.3
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 2.8e-63 246.1 258 56.2
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 3.7e-63 245.7 254 55.1
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 1.1e-62 244.2 255 53.3
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 1.1e-62 244.2 257 55.3
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 1.4e-62 243.8 261 53.6
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 1.8e-62 243.4 257 55.3
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 2.4e-62 243.0 260 54.6
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 2.4e-62 243.0 256 54.7
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 4.1e-62 242.3 253 55.3
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 4.1e-62 242.3 255 54.1
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 7.0e-62 241.5 255 54.5
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 1.2e-61 240.7 246 54.9
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 1.2e-61 240.7 253 53.0
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.6e-61 240.4 257 54.5
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 2.0e-61 240.0 260 51.9
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 5.9e-61 238.4 258 52.3
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 7.7e-61 238.0 255 55.3
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 1.0e-60 237.7 258 51.9
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.3e-60 237.3 179 70.4
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 1.7e-60 236.9 244 56.1
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 2.3e-60 236.5 259 53.7
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 2.9e-60 236.1 258 51.6
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 3.8e-60 235.7 253 53.8
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 3.8e-60 235.7 259 52.5
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 3.8e-60 235.7 245 54.7
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 5.0e-60 235.3 253 53.8
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 5.0e-60 235.3 260 52.7
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 6.6e-60 235.0 255 52.5
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 6.6e-60 235.0 255 53.7
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 6.6e-60 235.0 255 53.7
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 8.6e-60 234.6 259 53.3
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 1.9e-59 233.4 243 55.6
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 3.3e-59 232.6 244 56.1
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 5.6e-59 231.9 254 54.7
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 5.6e-59 231.9 246 55.7
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 1.2e-58 230.7 254 53.9
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 1.6e-58 230.3 254 52.8
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 3.6e-58 229.2 232 55.6
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 3.6e-58 229.2 252 55.2
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 6.1e-58 228.4 238 54.2
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 8.0e-58 228.0 254 52.8
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 8.0e-58 228.0 252 54.8
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.4e-57 227.3 260 51.5
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 3.0e-57 226.1 257 52.5
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 3.0e-57 226.1 247 53.4
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 5.2e-57 225.3 247 53.4
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 2.0e-56 223.4 248 54.8
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 2.6e-56 223.0 246 52.4
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 4.4e-56 222.2 254 50.0
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 9.8e-56 221.1 263 51.7
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 4.1e-54 215.7 264 50.4
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 2.7e-53 213.0 239 53.1
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.3e-52 210.7 258 49.2
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 1.3e-52 210.7 242 51.2
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 5.0e-52 208.8 254 50.4
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 5.6e-51 205.3 242 50.0
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 1.0e-49 201.1 254 47.2
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 1.8e-49 200.3 253 47.0
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 2.3e-49 199.9 239 51.5
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 3.4e-48 196.1 242 48.8
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.3e-44 184.1 126 77.0
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 3.4e-40 169.5 184 52.7
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 4.6e-37 159.1 194 50.0
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 3.3e-35 152.9 132 63.6
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 9.9e-32 141.4 192 44.3
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 1.1e-22 111.3 121 54.5
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 3.2e-22 109.8 258 35.3
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 5.4e-22 109.0 234 35.9
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 7.8e-21 105.1 174 40.8
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 9.6e-19 98.2 146 43.2
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 1.6e-18 97.4 75 68.0
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 4.0e-17 92.8 137 43.8
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 1.5e-16 90.9 79 68.4
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 5.8e-16 89.0 154 39.0
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 7.6e-16 88.6 107 47.7
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 2.3e-12 77.0 85 49.4
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 1.2e-08 64.7 118 38.1
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.1e-06 58.2 83 41.0
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 1.4e-06 57.8 59 52.5
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 9.3e-06 55.1 77 40.3


User provided reference genes

Program Settings