Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 4.4e-283 977.2 480 100.0
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 1.5e-278 962.2 483 98.6
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 1.2e-256 889.4 477 91.8
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 1.8e-252 875.5 459 93.2
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 1.8e-252 875.5 459 93.2
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.4e-188 663.3 472 72.2
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 1.9e-177 626.3 449 73.1
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.2e-174 617.1 480 67.7
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.9e-164 583.2 478 63.2
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.2e-163 580.5 478 65.5
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.8e-160 569.3 477 64.4
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 1.8e-143 513.5 453 60.3
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 3.1e-119 433.0 456 51.8
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 4.8e-112 409.1 357 60.5
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 6.3e-88 328.9 456 41.0
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 9.1e-87 325.1 459 40.5
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.5e-84 317.8 468 40.8
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 5.5e-84 315.8 457 40.3
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 3.4e-81 306.6 425 41.2
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 5.7e-81 305.8 459 40.7
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.7e-80 304.3 463 39.5
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.4e-79 301.2 459 37.7
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.8e-79 300.8 458 37.1
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 3.1e-79 300.1 460 39.1
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 5.4e-79 299.3 473 37.4
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 7.0e-79 298.9 457 37.9
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.6e-78 297.7 465 38.3
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 2.0e-78 297.4 452 39.8
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 2.7e-78 297.0 457 37.9
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 4.5e-78 296.2 475 40.2
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 1.1e-76 291.6 456 36.8
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.9e-76 290.8 457 38.1
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 3.2e-76 290.0 457 38.1
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 9.4e-76 288.5 461 38.2
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 3.6e-75 286.6 457 37.0
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 3.6e-75 286.6 469 38.6
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 6.1e-75 285.8 459 37.7
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 8.0e-75 285.4 455 35.8
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 3.0e-74 283.5 455 35.2
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 8.8e-74 282.0 508 37.0
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 2.0e-73 280.8 543 33.7
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 4.4e-73 279.6 450 37.3
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 5.7e-73 279.3 459 38.3
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 5.7e-73 279.3 459 36.8
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 5.7e-73 279.3 458 37.3
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 9.8e-73 278.5 458 37.6
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 2.8e-72 276.9 461 37.3
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.2e-70 271.6 462 35.9
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 2.7e-70 270.4 459 36.2
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.0e-69 268.5 465 37.0
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 1.7e-69 267.7 419 38.9
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 6.6e-69 265.8 447 38.7
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 5.6e-68 262.7 460 35.9
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 9.5e-68 261.9 461 37.1
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.2e-67 261.5 461 35.6
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.6e-67 261.2 459 35.9
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 8.0e-67 258.8 459 37.3
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 8.0e-67 258.8 466 36.7
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.4e-66 258.1 472 36.2
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 3.0e-66 256.9 459 36.2
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 3.0e-66 256.9 459 36.8
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 4.0e-66 256.5 459 36.4
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 2.9e-64 250.4 460 33.0
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 4.9e-64 249.6 459 34.9
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 3.2e-63 246.9 446 34.1
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 4.1e-63 246.5 451 33.7
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 4.6e-62 243.0 525 32.4
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 3.0e-61 240.4 450 34.0
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 3.0e-61 240.4 467 35.3
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 1.9e-60 237.7 470 34.3
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.5e-60 237.3 464 35.1
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 2.5e-60 237.3 392 37.0
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 4.3e-60 236.5 451 33.3
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 5.6e-60 236.1 450 34.0
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.8e-59 233.8 448 33.0
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 3.6e-59 233.4 450 33.6
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 6.2e-59 232.6 479 35.1
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 6.2e-59 232.6 384 39.3
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 8.9e-58 228.8 406 38.4
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 2.0e-57 227.6 469 33.9
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 5.8e-57 226.1 485 32.8
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 9.8e-57 225.3 461 34.1
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.3e-56 224.9 451 33.5
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 3.7e-56 223.4 379 35.9
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 4.9e-56 223.0 459 32.9
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 4.9e-56 223.0 452 33.4
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 6.4e-56 222.6 449 32.1
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.4e-55 220.7 459 33.3
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.2e-55 220.3 449 32.5
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 9.2e-55 218.8 458 32.1
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 9.2e-55 218.8 478 32.6
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 1.2e-54 218.4 463 33.3
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.6e-54 218.0 459 33.1
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.7e-54 217.2 459 32.5
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 4.6e-54 216.5 459 32.7
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 4.6e-54 216.5 459 32.9
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.3e-53 214.2 468 32.7
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.3e-53 214.2 468 32.7
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 3.9e-53 213.4 405 34.1
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 1.1e-52 211.8 456 30.3
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 3.3e-52 210.3 458 33.4
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.3e-52 209.9 460 32.8
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 4.3e-52 209.9 457 33.5
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 5.6e-52 209.5 460 32.6
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 1.6e-51 208.0 467 32.1
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.6e-51 206.8 457 33.0
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 8.1e-51 205.7 449 32.1
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.1e-50 205.3 460 32.4
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.1e-50 205.3 458 31.2
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 1.1e-50 205.3 450 32.9
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 1.2e-49 201.8 455 32.5
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.6e-49 200.7 458 32.1
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 4.4e-49 199.9 482 30.3
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 5.8e-49 199.5 377 35.3
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 3.7e-48 196.8 429 32.9
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 6.4e-48 196.1 470 32.1
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 8.3e-48 195.7 478 32.4
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 1.1e-47 195.3 457 30.9
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 1.1e-47 195.3 459 32.2
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.9e-47 194.5 465 30.1
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 5.4e-47 193.0 263 42.2
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 7.1e-47 192.6 429 33.1
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.5e-46 190.3 491 30.1
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 2.3e-45 187.6 460 30.7
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.5e-44 184.9 334 35.3
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 2.5e-44 184.1 482 29.9
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 4.3e-44 183.3 493 32.5
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 9.5e-44 182.2 248 41.1
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 6.2e-43 179.5 307 37.8
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.1e-42 178.7 453 30.7
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 6.8e-42 176.0 465 29.7
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 3.7e-40 170.2 374 34.0
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 6.0e-38 162.9 304 35.5
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 7.3e-36 156.0 305 34.8
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.4e-34 151.8 390 31.0
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 3.8e-32 143.7 306 35.3
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 1.1e-31 142.1 248 36.7
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.5e-30 137.1 313 32.6
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 1.0e-29 135.6 415 27.7
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 4.3e-28 130.2 292 36.3
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 1.3e-27 128.6 453 28.5
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.6e-27 128.3 138 47.8
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 9.0e-26 122.5 312 29.8
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 3.8e-24 117.1 310 30.3
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.1e-23 115.5 201 36.3
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.9e-23 114.8 128 46.1
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.5e-22 110.5 91 61.5
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 1.7e-21 108.2 213 32.4
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.3e-19 102.1 305 30.2
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 1.3e-16 92.0 253 32.4
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 3.0e-13 80.9 172 29.7
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 3.0e-13 80.9 169 33.7
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 1.1e-10 72.4 115 38.3
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.2e-09 68.9 120 29.2
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 5.8e-09 66.6 66 45.5
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 3.8e-08 63.9 131 33.6
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.1e-07 62.4 191 27.7


User provided reference genes

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