Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 5.3e-119 431.0 217 100.0
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 5.3e-119 431.0 217 100.0
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 3.5e-110 401.7 219 93.6
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 4.0e-106 388.3 217 91.7
C09p25480 Brassica napus HOM05D003792 ORTHO05D003195 7.7e-94 347.4 196 89.8
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 2.7e-86 322.4 220 80.0
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 2.7e-78 295.8 241 71.0
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 2.7e-78 295.8 248 70.2
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.1e-76 290.4 250 70.4
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.1e-76 290.4 250 70.4
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 2.8e-75 285.8 239 69.0
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 3.6e-75 285.4 239 69.0
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 3.6e-75 285.4 239 69.0
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 1.8e-74 283.1 231 71.0
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 8.4e-64 247.7 240 64.2
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 1.6e-62 243.4 254 60.6
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 2.3e-61 239.6 235 62.1
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 6.6e-61 238.0 242 62.8
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 2.5e-60 236.1 251 60.2
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 2.1e-59 233.0 232 62.9
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 8.1e-35 151.4 259 42.5
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 4.6e-30 135.6 247 40.9
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 7.9e-30 134.8 221 47.1
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.2e-22 110.9 235 38.3
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 3.6e-22 109.4 235 37.9
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 7.9e-22 108.2 213 39.0
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.3e-21 107.5 218 40.4
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 1.1e-20 104.4 245 37.1
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 2.5e-20 103.2 223 36.3
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 3.3e-20 102.8 237 38.8
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 3.3e-20 102.8 226 38.5
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 3.3e-20 102.8 223 38.1
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 5.7e-20 102.1 227 37.0
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 1.6e-19 100.5 231 39.0
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 1.6e-19 100.5 223 37.7
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.2e-19 100.1 153 43.8
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.7e-19 99.4 231 37.2
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 8.2e-19 98.2 214 37.9
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.1e-18 97.8 231 37.2
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 1.1e-18 97.8 199 37.2
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 1.4e-18 97.4 208 38.9
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.8e-18 97.1 206 37.9
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 1.8e-18 97.1 237 35.0
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 4.1e-18 95.9 241 34.4
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 4.1e-18 95.9 179 40.8
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 4.1e-18 95.9 224 37.5
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.3e-18 95.5 183 39.9
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 9.1e-18 94.7 231 33.3
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 4.5e-17 92.4 213 36.6
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 4.5e-17 92.4 236 32.6
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 5.9e-17 92.0 223 37.2
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 7.7e-17 91.7 235 33.6
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 7.7e-17 91.7 201 35.8
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 7.7e-17 91.7 236 34.3
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.0e-16 91.3 215 37.7
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 1.3e-16 90.9 241 34.4
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 1.7e-16 90.5 203 36.0
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 3.8e-16 89.4 208 36.1
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 6.5e-16 88.6 235 33.2
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 6.5e-16 88.6 232 33.6
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.4e-15 87.4 253 34.4
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 3.2e-15 86.3 211 33.2
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 7.2e-15 85.1 208 33.2
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.6e-14 84.0 244 34.8
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 1.6e-14 84.0 190 35.3
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.6e-14 84.0 186 37.1
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.1e-14 83.6 239 32.2
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 2.1e-14 83.6 179 30.7
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 2.7e-14 83.2 205 33.7
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 3.6e-14 82.8 203 32.5
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 4.6e-14 82.4 197 38.1
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 4.6e-14 82.4 218 31.7
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 6.1e-14 82.0 203 31.5
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 6.1e-14 82.0 199 32.2
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 7.9e-14 81.6 230 36.1
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.4e-13 80.9 172 36.6
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 1.4e-13 80.9 197 33.0
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 1.8e-13 80.5 188 36.2
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 1.8e-13 80.5 234 32.9
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 2.3e-13 80.1 231 30.3
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 2.3e-13 80.1 128 41.4
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 3.0e-13 79.7 186 36.6
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 6.7e-13 78.6 211 34.6
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 6.7e-13 78.6 189 36.0
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 8.8e-13 78.2 205 30.7
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 1.1e-12 77.8 214 35.0
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.1e-12 77.8 236 32.2
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 1.5e-12 77.4 168 35.7
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 2.0e-12 77.0 220 30.5
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 2.0e-12 77.0 199 33.2
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 2.6e-12 76.6 221 30.3
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 4.4e-12 75.9 216 33.8
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 5.7e-12 75.5 116 43.1
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 7.4e-12 75.1 212 31.6
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 9.7e-12 74.7 192 33.9
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 1.3e-11 74.3 168 32.7
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 1.7e-11 73.9 206 33.5
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.8e-11 73.2 172 35.5
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 2.8e-11 73.2 128 36.7
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.8e-11 73.2 261 31.4
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 4.8e-11 72.4 255 31.8
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 6.3e-11 72.0 212 34.4
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 6.3e-11 72.0 108 38.9
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 1.1e-10 71.2 204 33.3
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.4e-10 70.9 204 30.9
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 1.4e-10 70.9 230 31.7
Aqoxy5G01231 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 1.8e-10 70.5 212 30.7
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 3.1e-10 69.7 192 32.3
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 3.1e-10 69.7 192 32.3
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 4.1e-10 69.3 215 32.1
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 5.3e-10 68.9 180 33.3
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 6.9e-10 68.6 127 34.6
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 9.1e-10 68.2 234 30.8
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 9.1e-10 68.2 217 28.6
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 2.6e-09 66.6 172 33.1
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 4.5e-09 65.9 169 29.6
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 7.7e-09 65.1 111 38.7
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 7.7e-09 65.1 231 29.4
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.0e-08 64.7 218 28.9
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 1.7e-08 63.9 201 31.3
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 2.9e-08 63.2 198 31.3
Migut.C00575 Erythranthe guttata HOM05D003792 ORTHO05D003195 2.9e-08 63.2 191 31.4
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 2.9e-08 63.2 207 30.0
Migut.B00353 Erythranthe guttata HOM05D011234 ORTHO05D003195 5.0e-08 62.4 206 29.1
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 8.5e-08 61.6 209 30.1
Os03g0184100 Oryza sativa ssp. japonica HOM05D003792 ORTHO05D003195 8.5e-08 61.6 204 31.9
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 8.5e-08 61.6 219 29.7
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 1.4e-07 60.8 182 30.8
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 3.2e-07 59.7 212 30.2
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 3.2e-07 59.7 220 28.6
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 4.2e-07 59.3 193 30.6
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 4.2e-07 59.3 216 30.1
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 5.5e-07 58.9 121 33.9
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 5.5e-07 58.9 220 27.7
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 7.2e-07 58.5 219 32.0
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 7.2e-07 58.5 195 29.2
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 9.4e-07 58.2 159 30.8
AUR62042730 Chenopodium quinoa HOM05D043499 ORTHO05D003195 2.1e-06 57.0 123 34.1
unitig_8.g3371 Utricularia gibba HOM05D061388 ORTHO05D003195 2.7e-06 56.6 66 45.5
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 2.7e-06 56.6 170 30.6
ATR0988G008 Amborella trichopoda HOM05D003792 ORTHO05D003195 3.6e-06 56.2 224 27.2
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.6e-06 56.2 205 28.8
PSO170G6463 Papaver somniferum HOM05D003792 ORTHO05D003195 3.6e-06 56.2 192 32.8
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 6.1e-06 55.5 244 25.4
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.1e-06 55.5 205 28.3
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 6.1e-06 55.5 235 29.8
unitig_22.g6770 Utricularia gibba HOM05D061388 ORTHO05D003195 6.1e-06 55.5 64 45.3
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 7.9e-06 55.1 205 31.2


User provided reference genes

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